Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX2-1P43699 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NKX2-1P43699 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
NKX2-1P43699 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX2-1P43699 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NKX2-1P43699 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.48■□□□□ 0.39
NKX2-1P43699 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
NKX2-1P43699 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.47■□□□□ 0.39
NKX2-1P43699 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 TK2-202ENST00000417693 1046 ntTSL 2 BASIC17.47■□□□□ 0.39
NKX2-1P43699 AC004987.1-201ENST00000428627 508 ntBASIC17.47■□□□□ 0.39
NKX2-1P43699 AC104564.3-201ENST00000582367 638 ntBASIC17.47■□□□□ 0.39
NKX2-1P43699 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
NKX2-1P43699 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC17.47■□□□□ 0.39
NKX2-1P43699 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
NKX2-1P43699 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.47■□□□□ 0.39
NKX2-1P43699 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NKX2-1P43699 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
NKX2-1P43699 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.47■□□□□ 0.39
NKX2-1P43699 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NKX2-1P43699 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NKX2-1P43699 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
NKX2-1P43699 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
NKX2-1P43699 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
NKX2-1P43699 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
NKX2-1P43699 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.46■□□□□ 0.39
NKX2-1P43699 TSPY13P-201ENST00000338964 914 ntBASIC17.46■□□□□ 0.39
NKX2-1P43699 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC17.46■□□□□ 0.39
NKX2-1P43699 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
NKX2-1P43699 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC17.46■□□□□ 0.39
NKX2-1P43699 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
NKX2-1P43699 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
NKX2-1P43699 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.46■□□□□ 0.39
NKX2-1P43699 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NKX2-1P43699 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
NKX2-1P43699 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.46■□□□□ 0.38
NKX2-1P43699 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX2-1P43699 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX2-1P43699 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC17.45■□□□□ 0.38
NKX2-1P43699 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC17.45■□□□□ 0.38
NKX2-1P43699 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX2-1P43699 AC012354.3-201ENST00000623734 483 ntBASIC17.45■□□□□ 0.38
NKX2-1P43699 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
NKX2-1P43699 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX2-1P43699 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
NKX2-1P43699 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
NKX2-1P43699 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX2-1P43699 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX2-1P43699 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NKX2-1P43699 LINC01006-201ENST00000333319 2292 ntBASIC17.45■□□□□ 0.38
NKX2-1P43699 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
NKX2-1P43699 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.44■□□□□ 0.38
NKX2-1P43699 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
NKX2-1P43699 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
NKX2-1P43699 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX2-1P43699 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX2-1P43699 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.44■□□□□ 0.38
NKX2-1P43699 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX2-1P43699 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
NKX2-1P43699 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NKX2-1P43699 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.44■□□□□ 0.38
NKX2-1P43699 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC17.43■□□□□ 0.38
NKX2-1P43699 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
NKX2-1P43699 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX2-1P43699 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.43■□□□□ 0.38
NKX2-1P43699 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
NKX2-1P43699 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
NKX2-1P43699 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX2-1P43699 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NKX2-1P43699 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms