Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
HMGB1P09429 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
HMGB1P09429 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.31■■□□□ 1.64
HMGB1P09429 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
HMGB1P09429 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
HMGB1P09429 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
HMGB1P09429 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
HMGB1P09429 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC25.3■■□□□ 1.64
HMGB1P09429 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC25.3■■□□□ 1.64
HMGB1P09429 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGB1P09429 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGB1P09429 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGB1P09429 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.3■■□□□ 1.64
HMGB1P09429 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.3■■□□□ 1.64
HMGB1P09429 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC25.3■■□□□ 1.64
HMGB1P09429 AC005837.3-201ENST00000612163 286 ntBASIC25.3■■□□□ 1.64
HMGB1P09429 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
HMGB1P09429 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGB1P09429 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGB1P09429 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGB1P09429 ME2-206ENST00000638410 2289 ntTSL 5 BASIC25.3■■□□□ 1.64
HMGB1P09429 ME2-210ENST00000639255 2262 ntTSL 5 BASIC25.3■■□□□ 1.64
HMGB1P09429 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC25.3■■□□□ 1.64
HMGB1P09429 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HMGB1P09429 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC25.29■■□□□ 1.64
HMGB1P09429 AP006587.3-201ENST00000525742 1516 ntBASIC25.29■■□□□ 1.64
HMGB1P09429 MFF-208ENST00000409616 1247 ntTSL 5 BASIC25.29■■□□□ 1.64
HMGB1P09429 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
HMGB1P09429 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC25.29■■□□□ 1.64
HMGB1P09429 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC25.29■■□□□ 1.64
HMGB1P09429 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HMGB1P09429 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HMGB1P09429 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HMGB1P09429 AC009237.3-201ENST00000393279 1427 ntBASIC25.29■■□□□ 1.64
HMGB1P09429 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
HMGB1P09429 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC25.28■■□□□ 1.64
HMGB1P09429 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
HMGB1P09429 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC25.28■■□□□ 1.64
HMGB1P09429 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC25.28■■□□□ 1.64
HMGB1P09429 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.28■■□□□ 1.64
HMGB1P09429 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
HMGB1P09429 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
HMGB1P09429 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGB1P09429 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
HMGB1P09429 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC25.27■■□□□ 1.64
HMGB1P09429 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGB1P09429 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
HMGB1P09429 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGB1P09429 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGB1P09429 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.27■■□□□ 1.64
HMGB1P09429 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.27■■□□□ 1.64
HMGB1P09429 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGB1P09429 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
HMGB1P09429 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC25.27■■□□□ 1.64
HMGB1P09429 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC25.26■■□□□ 1.63
HMGB1P09429 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
HMGB1P09429 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
HMGB1P09429 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HMGB1P09429 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC25.26■■□□□ 1.63
HMGB1P09429 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
HMGB1P09429 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
HMGB1P09429 CLDN5-201ENST00000403084 2357 ntBASIC25.25■■□□□ 1.63
HMGB1P09429 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
HMGB1P09429 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HMGB1P09429 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HMGB1P09429 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.25■■□□□ 1.63
HMGB1P09429 BX005040.4-201ENST00000637145 1518 ntBASIC25.25■■□□□ 1.63
HMGB1P09429 AC003102.1-202ENST00000563394 1796 ntBASIC25.25■■□□□ 1.63
HMGB1P09429 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HMGB1P09429 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
HMGB1P09429 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC25.25■■□□□ 1.63
HMGB1P09429 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGB1P09429 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
HMGB1P09429 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGB1P09429 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGB1P09429 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.24■■□□□ 1.63
HMGB1P09429 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.24■■□□□ 1.63
HMGB1P09429 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
HMGB1P09429 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HMGB1P09429 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HMGB1P09429 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGB1P09429 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC25.24■■□□□ 1.63
HMGB1P09429 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC25.23■■□□□ 1.63
HMGB1P09429 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
HMGB1P09429 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HMGB1P09429 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGB1P09429 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGB1P09429 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGB1P09429 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGB1P09429 MIR638-201ENST00000385237 100 ntBASIC25.23■■□□□ 1.63
HMGB1P09429 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC25.23■■□□□ 1.63
HMGB1P09429 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
HMGB1P09429 AC012414.1-201ENST00000556676 535 ntBASIC25.23■■□□□ 1.63
HMGB1P09429 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC25.23■■□□□ 1.63
HMGB1P09429 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGB1P09429 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC25.23■■□□□ 1.63
HMGB1P09429 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC25.22■■□□□ 1.63
HMGB1P09429 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC25.22■■□□□ 1.63
HMGB1P09429 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 MPST-204ENST00000404393 1329 ntTSL 5 BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms