Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC13.56□□□□□ -0.24
APOBP04114 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC13.56□□□□□ -0.24
APOBP04114 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
APOBP04114 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 MDFI-202ENST00000373050 809 ntTSL 2 BASIC13.56□□□□□ -0.24
APOBP04114 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC13.56□□□□□ -0.24
APOBP04114 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC13.56□□□□□ -0.24
APOBP04114 AC138907.5-202ENST00000569484 235 ntBASIC13.56□□□□□ -0.24
APOBP04114 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
APOBP04114 Z99916.2-201ENST00000604037 246 ntBASIC13.56□□□□□ -0.24
APOBP04114 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 MED17-227ENST00000640521 2047 ntTSL 5 BASIC13.55□□□□□ -0.24
APOBP04114 SLC29A4P2-201ENST00000504749 1089 ntBASIC13.55□□□□□ -0.24
APOBP04114 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC13.55□□□□□ -0.24
APOBP04114 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC13.55□□□□□ -0.24
APOBP04114 BET1L-204ENST00000410108 637 ntTSL 3 BASIC13.55□□□□□ -0.24
APOBP04114 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
APOBP04114 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC13.55□□□□□ -0.24
APOBP04114 AC016405.3-201ENST00000607710 860 ntBASIC13.55□□□□□ -0.24
APOBP04114 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
APOBP04114 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
APOBP04114 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC13.55□□□□□ -0.24
APOBP04114 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
APOBP04114 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 BMP1-204ENST00000397814 836 ntTSL 4 BASIC13.54□□□□□ -0.24
APOBP04114 AL355472.2-201ENST00000422958 438 ntBASIC13.54□□□□□ -0.24
APOBP04114 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC13.54□□□□□ -0.24
APOBP04114 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 GXYLT1P3-201ENST00000453058 1193 ntBASIC13.54□□□□□ -0.24
APOBP04114 OR2A1-AS1-201ENST00000462305 773 ntBASIC13.54□□□□□ -0.24
APOBP04114 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC13.54□□□□□ -0.24
APOBP04114 KRT18P20-201ENST00000548986 1279 ntBASIC13.54□□□□□ -0.24
APOBP04114 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC13.54□□□□□ -0.24
APOBP04114 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC13.54□□□□□ -0.24
APOBP04114 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC13.54□□□□□ -0.24
APOBP04114 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC13.54□□□□□ -0.24
APOBP04114 SNORA78-201ENST00000459373 127 ntBASIC13.54□□□□□ -0.24
APOBP04114 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC13.54□□□□□ -0.24
APOBP04114 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC13.54□□□□□ -0.24
APOBP04114 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC13.54□□□□□ -0.24
APOBP04114 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
APOBP04114 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
APOBP04114 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 AC233263.1-201ENST00000578059 224 ntBASIC13.53□□□□□ -0.24
APOBP04114 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
APOBP04114 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC13.53□□□□□ -0.24
APOBP04114 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 TSPY15P-201ENST00000457163 923 ntBASIC13.53□□□□□ -0.24
APOBP04114 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC13.53□□□□□ -0.24
APOBP04114 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC13.53□□□□□ -0.24
APOBP04114 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
APOBP04114 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC13.53□□□□□ -0.24
APOBP04114 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
APOBP04114 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC13.53□□□□□ -0.24
APOBP04114 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
APOBP04114 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.24
APOBP04114 AC012306.2-201ENST00000609350 630 ntBASIC13.52□□□□□ -0.24
APOBP04114 AL359736.2-201ENST00000621992 437 ntBASIC13.52□□□□□ -0.24
APOBP04114 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
APOBP04114 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
APOBP04114 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
APOBP04114 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
APOBP04114 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
APOBP04114 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms