Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC26.47■■□□□ 1.83
COL4A1P02462 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC26.47■■□□□ 1.83
COL4A1P02462 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC26.47■■□□□ 1.83
COL4A1P02462 KRT18P6-201ENST00000555540 1265 ntBASIC26.47■■□□□ 1.83
COL4A1P02462 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
COL4A1P02462 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL4A1P02462 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.46■■□□□ 1.83
COL4A1P02462 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL4A1P02462 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
COL4A1P02462 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL4A1P02462 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL4A1P02462 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL4A1P02462 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC26.46■■□□□ 1.83
COL4A1P02462 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC26.46■■□□□ 1.83
COL4A1P02462 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
COL4A1P02462 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
COL4A1P02462 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
COL4A1P02462 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL4A1P02462 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC26.45■■□□□ 1.82
COL4A1P02462 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC26.45■■□□□ 1.82
COL4A1P02462 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC26.45■■□□□ 1.82
COL4A1P02462 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
COL4A1P02462 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
COL4A1P02462 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC26.45■■□□□ 1.82
COL4A1P02462 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A1P02462 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A1P02462 TSPY20P-201ENST00000450910 630 ntBASIC26.44■■□□□ 1.82
COL4A1P02462 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC26.44■■□□□ 1.82
COL4A1P02462 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
COL4A1P02462 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A1P02462 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A1P02462 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A1P02462 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL4A1P02462 CD99P1-205ENST00000527459 561 ntBASIC26.44■■□□□ 1.82
COL4A1P02462 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC26.44■■□□□ 1.82
COL4A1P02462 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC26.44■■□□□ 1.82
COL4A1P02462 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL4A1P02462 AC068338.2-201ENST00000563278 1430 ntBASIC26.43■■□□□ 1.82
COL4A1P02462 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL4A1P02462 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC26.43■■□□□ 1.82
COL4A1P02462 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC26.43■■□□□ 1.82
COL4A1P02462 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL4A1P02462 KRT18P20-201ENST00000548986 1279 ntBASIC26.43■■□□□ 1.82
COL4A1P02462 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC26.43■■□□□ 1.82
COL4A1P02462 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
COL4A1P02462 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A1P02462 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A1P02462 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
COL4A1P02462 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A1P02462 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC26.42■■□□□ 1.82
COL4A1P02462 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A1P02462 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A1P02462 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC26.42■■□□□ 1.82
COL4A1P02462 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
COL4A1P02462 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A1P02462 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL4A1P02462 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC26.41■■□□□ 1.82
COL4A1P02462 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC26.41■■□□□ 1.82
COL4A1P02462 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC26.41■■□□□ 1.82
COL4A1P02462 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC26.41■■□□□ 1.82
COL4A1P02462 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL4A1P02462 AC139530.1-201ENST00000575312 1977 ntBASIC26.41■■□□□ 1.82
COL4A1P02462 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
COL4A1P02462 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC26.41■■□□□ 1.82
COL4A1P02462 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
COL4A1P02462 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
COL4A1P02462 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
COL4A1P02462 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL4A1P02462 FXN-202ENST00000396364 980 ntTSL 5 BASIC26.4■■□□□ 1.82
COL4A1P02462 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC26.4■■□□□ 1.82
COL4A1P02462 AL034346.1-201ENST00000568244 1277 ntBASIC26.4■■□□□ 1.82
COL4A1P02462 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL4A1P02462 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL4A1P02462 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC26.39■■□□□ 1.82
COL4A1P02462 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC26.39■■□□□ 1.82
COL4A1P02462 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC26.39■■□□□ 1.82
COL4A1P02462 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
COL4A1P02462 AC093787.1-201ENST00000450396 207 ntBASIC26.39■■□□□ 1.82
COL4A1P02462 AF201337.1-201ENST00000520239 748 ntBASIC26.39■■□□□ 1.82
COL4A1P02462 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.39■■□□□ 1.82
COL4A1P02462 AC133552.2-202ENST00000575694 574 ntBASIC26.39■■□□□ 1.82
COL4A1P02462 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
COL4A1P02462 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
COL4A1P02462 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.81
COL4A1P02462 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
COL4A1P02462 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC26.38■■□□□ 1.81
COL4A1P02462 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.38■■□□□ 1.81
COL4A1P02462 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 AC013268.1-206ENST00000638368 961 ntBASIC26.38■■□□□ 1.81
COL4A1P02462 AC112229.1-201ENST00000639295 961 ntBASIC26.38■■□□□ 1.81
COL4A1P02462 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 LTK-203ENST00000453182 2412 ntTSL 2 BASIC26.38■■□□□ 1.81
COL4A1P02462 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL4A1P02462 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms