Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AL139246.5-201ENST00000606645 996 ntBASIC20.49■□□□□ 0.87
SEMA3DO95025 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.49■□□□□ 0.87
SEMA3DO95025 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.49■□□□□ 0.87
SEMA3DO95025 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SEMA3DO95025 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 RASA4CP-201ENST00000424092 1398 ntBASIC20.48■□□□□ 0.87
SEMA3DO95025 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.48■□□□□ 0.87
SEMA3DO95025 AF213884.3-201ENST00000563833 479 ntBASIC20.48■□□□□ 0.87
SEMA3DO95025 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.48■□□□□ 0.87
SEMA3DO95025 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.48■□□□□ 0.87
SEMA3DO95025 SMUG1P1-201ENST00000590640 811 ntBASIC20.48■□□□□ 0.87
SEMA3DO95025 AL031432.3-201ENST00000607698 485 ntBASIC20.48■□□□□ 0.87
SEMA3DO95025 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.48■□□□□ 0.87
SEMA3DO95025 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.48■□□□□ 0.87
SEMA3DO95025 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SEMA3DO95025 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.47■□□□□ 0.87
SEMA3DO95025 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SEMA3DO95025 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
SEMA3DO95025 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SEMA3DO95025 FBXW4P1-201ENST00000426721 2239 ntBASIC20.47■□□□□ 0.87
SEMA3DO95025 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SEMA3DO95025 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.46■□□□□ 0.87
SEMA3DO95025 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 AP004607.7-201ENST00000527152 1677 ntBASIC20.46■□□□□ 0.87
SEMA3DO95025 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SEMA3DO95025 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.46■□□□□ 0.87
SEMA3DO95025 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SEMA3DO95025 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
SEMA3DO95025 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.46■□□□□ 0.87
SEMA3DO95025 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SEMA3DO95025 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.45■□□□□ 0.86
SEMA3DO95025 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.45■□□□□ 0.86
SEMA3DO95025 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
SEMA3DO95025 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SEMA3DO95025 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.45■□□□□ 0.86
SEMA3DO95025 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SEMA3DO95025 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SEMA3DO95025 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SEMA3DO95025 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.45■□□□□ 0.86
SEMA3DO95025 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SEMA3DO95025 TSPY26P-201ENST00000476365 1326 ntBASIC20.45■□□□□ 0.86
SEMA3DO95025 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SEMA3DO95025 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.45■□□□□ 0.86
SEMA3DO95025 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
SEMA3DO95025 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SEMA3DO95025 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SEMA3DO95025 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.44■□□□□ 0.86
SEMA3DO95025 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SEMA3DO95025 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SEMA3DO95025 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
SEMA3DO95025 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.44■□□□□ 0.86
SEMA3DO95025 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.44■□□□□ 0.86
SEMA3DO95025 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SEMA3DO95025 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SEMA3DO95025 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.44■□□□□ 0.86
SEMA3DO95025 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.44■□□□□ 0.86
SEMA3DO95025 AL136967.2-201ENST00000623968 743 ntBASIC20.44■□□□□ 0.86
SEMA3DO95025 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.44■□□□□ 0.86
SEMA3DO95025 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.44■□□□□ 0.86
SEMA3DO95025 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SEMA3DO95025 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.44■□□□□ 0.86
SEMA3DO95025 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SEMA3DO95025 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.44■□□□□ 0.86
SEMA3DO95025 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
SEMA3DO95025 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.44■□□□□ 0.86
SEMA3DO95025 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.44■□□□□ 0.86
SEMA3DO95025 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.44■□□□□ 0.86
SEMA3DO95025 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.43■□□□□ 0.86
SEMA3DO95025 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SEMA3DO95025 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms