Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.025e-6■■■□□ 18.9
SMNDC1O75940 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.065e-6■■■□□ 18.9
SMNDC1O75940 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.165e-6■■■□□ 18.9
SMNDC1O75940 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC12.36□□□□□ -0.435e-6■■■□□ 18.9
SMNDC1O75940 ANK1-209ENST00000520299 3587 ntTSL 210.72□□□□□ -0.695e-6■■■□□ 18.9
SMNDC1O75940 SNORD36C-201ENST00000516733 66 ntBASIC3.05□□□□□ -1.921e-323■■■□□ 18.9
SMNDC1O75940 SEPT9-227ENST00000590059 670 ntTSL 518.59■□□□□ 0.572e-6■■■□□ 18.9
SMNDC1O75940 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.422e-6■■■□□ 18.9
SMNDC1O75940 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC23.84■■□□□ 1.411e-6■■■□□ 18.9
SMNDC1O75940 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.41e-6■■■□□ 18.9
SMNDC1O75940 PKD1P6-201ENST00000343738 4769 ntBASIC21.51■■□□□ 1.032e-6■■■□□ 18.9
SMNDC1O75940 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.014e-14■■■□□ 18.9
SMNDC1O75940 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC24.69■■□□□ 1.544e-14■■■□□ 18.9
SMNDC1O75940 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.122e-6■■■□□ 18.9
SMNDC1O75940 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.09■□□□□ 0.652e-6■■■□□ 18.9
SMNDC1O75940 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.42■□□□□ 0.542e-6■■■□□ 18.9
SMNDC1O75940 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.76■□□□□ 0.114e-14■■■□□ 18.9
SMNDC1O75940 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.59■□□□□ 0.092e-6■■■□□ 18.9
SMNDC1O75940 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.24■□□□□ 0.032e-6■■■□□ 18.9
SMNDC1O75940 TCF25-222ENST00000568412 797 ntTSL 315.11■□□□□ 0.017e-10■■■□□ 18.9
SMNDC1O75940 TCF25-204ENST00000561958 763 ntTSL 315.11■□□□□ 0.017e-10■■■□□ 18.9
SMNDC1O75940 GNB2-210ENST00000451587 887 ntTSL 513.06□□□□□ -0.322e-6■■■□□ 18.9
SMNDC1O75940 TCF25-223ENST00000568870 263 ntTSL 212.36□□□□□ -0.437e-10■■■□□ 18.9
SMNDC1O75940 HMGN1-215ENST00000485550 745 ntTSL 59.55□□□□□ -0.884e-14■■■□□ 18.9
SMNDC1O75940 NADK2-208ENST00000511088 579 ntTSL 47.52□□□□□ -1.214e-14■■■□□ 18.9
SMNDC1O75940 TCF25-219ENST00000566751 383 ntTSL 57.43□□□□□ -1.227e-10■■■□□ 18.9
SMNDC1O75940 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC6.89□□□□□ -1.314e-14■■■□□ 18.9
SMNDC1O75940 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.91□□□□□ -1.464e-14■■■□□ 18.9
SMNDC1O75940 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.13□□□□□ -1.594e-14■■■□□ 18.9
SMNDC1O75940 NADK2-204ENST00000404560 3317 ntTSL 1 (best)4.71□□□□□ -1.664e-14■■■□□ 18.9
SMNDC1O75940 CIZ1-209ENST00000420484 684 ntTSL 326.69■■□□□ 1.864e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.134e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.014e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.994e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-211ENST00000467178 904 ntTSL 319.95■□□□□ 0.784e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-221ENST00000488559 952 ntTSL 518.06■□□□□ 0.484e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.454e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-218ENST00000476727 1205 ntTSL 515.98■□□□□ 0.154e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.224e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-225ENST00000538431 2996 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.344e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-228ENST00000634901 3462 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.444e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-201ENST00000277465 2742 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.444e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-207ENST00000393608 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.494e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-223ENST00000491954 955 ntTSL 311.14□□□□□ -0.634e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-208ENST00000415526 2508 ntAPPRIS ALT2 TSL 1 (best)10.95□□□□□ -0.664e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-202ENST00000324544 809 ntTSL 39.92□□□□□ -0.824e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-224ENST00000498156 642 ntTSL 57.91□□□□□ -1.144e-11■■■□□ 18.8
SMNDC1O75940 CIZ1-214ENST00000474442 457 ntTSL 47.35□□□□□ -1.234e-11■■■□□ 18.8
SMNDC1O75940 EEF1D-232ENST00000530445 1217 ntTSL 213.25□□□□□ -0.299e-10■■■□□ 18.8
SMNDC1O75940 SNORD116-13-201ENST00000384408 92 ntBASIC3.71□□□□□ -1.821e-30■■■□□ 18.8
SMNDC1O75940 DGCR8-205ENST00000475941 2669 ntTSL 217.5■□□□□ 0.391e-6■■■□□ 18.8
SMNDC1O75940 ABHD17A-205ENST00000591351 4647 ntTSL 218.13■□□□□ 0.491e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-211ENST00000567700 2196 ntTSL 219.97■□□□□ 0.794e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.44■□□□□ 0.384e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-207ENST00000565603 995 ntTSL 317.4■□□□□ 0.384e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-215ENST00000568834 1173 ntTSL 217.28■□□□□ 0.364e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.34e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-202ENST00000562263 811 ntTSL 316.3■□□□□ 0.24e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-216ENST00000569898 582 ntTSL 315.65■□□□□ 0.14e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.54■□□□□ 0.084e-6■■■□□ 18.8
SMNDC1O75940 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.19□□□□□ -0.144e-6■■■□□ 18.8
SMNDC1O75940 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.23□□□□□ -1.577e-8■■■□□ 18.7
SMNDC1O75940 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.46■□□□□ 0.875e-7■■■□□ 18.7
SMNDC1O75940 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.755e-7■■■□□ 18.7
SMNDC1O75940 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.63■□□□□ 0.735e-7■■■□□ 18.7
SMNDC1O75940 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.76■□□□□ 0.595e-7■■■□□ 18.7
SMNDC1O75940 GRB10-202ENST00000357271 2050 ntTSL 1 (best) BASIC12.6□□□□□ -0.395e-7■■■□□ 18.7
SMNDC1O75940 GRB10-210ENST00000407526 2279 ntTSL 1 (best) BASIC12.48□□□□□ -0.415e-7■■■□□ 18.7
SMNDC1O75940 GRB10-209ENST00000406641 2700 ntTSL 5 BASIC9.96□□□□□ -0.825e-7■■■□□ 18.7
SMNDC1O75940 GRB10-204ENST00000398812 4705 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.915e-7■■■□□ 18.7
SMNDC1O75940 GRB10-203ENST00000398810 4785 ntTSL 1 (best) BASIC9.21□□□□□ -0.935e-7■■■□□ 18.7
SMNDC1O75940 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC8.63□□□□□ -1.035e-7■■■□□ 18.7
SMNDC1O75940 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.067e-7■■■□□ 18.7
SMNDC1O75940 DGKQ-203ENST00000509465 4362 ntAPPRIS ALT2 TSL 515.14■□□□□ 0.017e-7■■■□□ 18.7
SMNDC1O75940 DGKQ-202ENST00000502309 818 ntTSL 514.34□□□□□ -0.117e-7■■■□□ 18.7
SMNDC1O75940 SEPT9-247ENST00000593189 817 ntTSL 510.2□□□□□ -0.783e-6■■■□□ 18.7
SMNDC1O75940 PPAN-204ENST00000444703 757 ntTSL 323.46■■□□□ 1.356e-7■■■□□ 18.7
SMNDC1O75940 PPAN-208ENST00000486482 1017 ntTSL 222.69■■□□□ 1.226e-7■■■□□ 18.7
SMNDC1O75940 GANAB-216ENST00000540933 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.434e-6■■■□□ 18.7
SMNDC1O75940 GANAB-215ENST00000534779 2626 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.464e-6■■■□□ 18.7
SMNDC1O75940 GANAB-211ENST00000532402 3718 ntTSL 1 (best)10.48□□□□□ -0.734e-6■■■□□ 18.7
SMNDC1O75940 GANAB-201ENST00000346178 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.784e-6■■■□□ 18.7
SMNDC1O75940 GANAB-202ENST00000356638 3608 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.824e-6■■■□□ 18.7
SMNDC1O75940 DOT1L-203ENST00000452696 624 ntTSL 313.32□□□□□ -0.281e-6■■■□□ 18.7
SMNDC1O75940 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.528e-10■■■□□ 18.7
SMNDC1O75940 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.611e-6■■■□□ 18.7
SMNDC1O75940 SLC30A10-201ENST00000356609 3650 ntTSL 1 (best)16.37■□□□□ 0.211e-6■■■□□ 18.7
SMNDC1O75940 SLC30A10-204ENST00000484239 1902 ntTSL 27.07□□□□□ -1.281e-6■■■□□ 18.7
SMNDC1O75940 PUM2-209ENST00000440577 4352 ntTSL 1 (best)5.78□□□□□ -1.481e-6■■■□□ 18.7
SMNDC1O75940 ABHD17A-203ENST00000588598 5425 ntTSL 220.24■□□□□ 0.837e-7■■■□□ 18.7
SMNDC1O75940 WDR43-202ENST00000407426 3533 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.293e-65■■■□□ 18.7
SMNDC1O75940 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC12.45□□□□□ -0.423e-8■■■□□ 18.7
SMNDC1O75940 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC12.1□□□□□ -0.473e-8■■■□□ 18.7
SMNDC1O75940 FN1-206ENST00000359671 8524 ntTSL 5 BASIC11.89□□□□□ -0.513e-8■■■□□ 18.7
SMNDC1O75940 FN1-212ENST00000446046 7952 ntTSL 1 (best) BASIC11.57□□□□□ -0.563e-8■■■□□ 18.7
SMNDC1O75940 FN1-211ENST00000443816 7762 ntTSL 1 (best) BASIC11.18□□□□□ -0.623e-8■■■□□ 18.7
SMNDC1O75940 FN1-203ENST00000354785 8905 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.633e-8■■■□□ 18.7
SMNDC1O75940 FN1-204ENST00000356005 7846 ntTSL 1 (best) BASIC11.06□□□□□ -0.643e-8■■■□□ 18.7
SMNDC1O75940 FN1-207ENST00000421182 8103 ntTSL 1 (best) BASIC10.98□□□□□ -0.653e-8■■■□□ 18.7
SMNDC1O75940 FN1-205ENST00000357867 7898 ntTSL 1 (best) BASIC10.86□□□□□ -0.673e-8■■■□□ 18.7
Retrieved 100 of 11,362 protein–RNA pairs in 165.7 ms