Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VPS4BO75351 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS4BO75351 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.92■□□□□ 0.94
VPS4BO75351 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VPS4BO75351 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS4BO75351 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS4BO75351 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS4BO75351 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.91■□□□□ 0.94
VPS4BO75351 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
VPS4BO75351 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.91■□□□□ 0.94
VPS4BO75351 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.91■□□□□ 0.94
VPS4BO75351 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
VPS4BO75351 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
VPS4BO75351 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VPS4BO75351 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VPS4BO75351 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.9■□□□□ 0.94
VPS4BO75351 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS4BO75351 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS4BO75351 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS4BO75351 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VPS4BO75351 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VPS4BO75351 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.9■□□□□ 0.94
VPS4BO75351 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
VPS4BO75351 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS4BO75351 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS4BO75351 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS4BO75351 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
VPS4BO75351 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.89■□□□□ 0.93
VPS4BO75351 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 AC008764.7-201ENST00000593779 1081 ntBASIC20.89■□□□□ 0.93
VPS4BO75351 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.89■□□□□ 0.93
VPS4BO75351 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VPS4BO75351 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.89■□□□□ 0.93
VPS4BO75351 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.89■□□□□ 0.93
VPS4BO75351 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS4BO75351 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS4BO75351 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS4BO75351 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS4BO75351 AC241377.3-202ENST00000626088 1088 ntBASIC20.88■□□□□ 0.93
VPS4BO75351 AC241585.3-202ENST00000628937 1088 ntBASIC20.88■□□□□ 0.93
VPS4BO75351 AC245100.8-202ENST00000629247 1058 ntBASIC20.88■□□□□ 0.93
VPS4BO75351 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
VPS4BO75351 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
VPS4BO75351 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS4BO75351 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS4BO75351 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS4BO75351 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS4BO75351 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
VPS4BO75351 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS4BO75351 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VPS4BO75351 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS4BO75351 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VPS4BO75351 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS4BO75351 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS4BO75351 AL137784.2-201ENST00000607332 1000 ntBASIC20.87■□□□□ 0.93
VPS4BO75351 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS4BO75351 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.87■□□□□ 0.93
VPS4BO75351 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS4BO75351 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VPS4BO75351 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
VPS4BO75351 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS4BO75351 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
VPS4BO75351 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VPS4BO75351 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4BO75351 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS4BO75351 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VPS4BO75351 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4BO75351 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4BO75351 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.86■□□□□ 0.93
VPS4BO75351 AC079089.2-201ENST00000531211 1277 ntBASIC20.86■□□□□ 0.93
VPS4BO75351 AL031602.1-201ENST00000633169 911 ntBASIC20.86■□□□□ 0.93
VPS4BO75351 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4BO75351 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VPS4BO75351 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
VPS4BO75351 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4BO75351 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VPS4BO75351 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS4BO75351 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
VPS4BO75351 SERBP1P1-201ENST00000396021 1160 ntBASIC20.85■□□□□ 0.93
VPS4BO75351 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS4BO75351 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms