Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.97■□□□□ 0.95
SDC3O75056 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.97■□□□□ 0.95
SDC3O75056 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SDC3O75056 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SDC3O75056 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.97■□□□□ 0.95
SDC3O75056 AC142086.2-201ENST00000569753 217 ntBASIC20.97■□□□□ 0.95
SDC3O75056 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SDC3O75056 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.97■□□□□ 0.95
SDC3O75056 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SDC3O75056 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SDC3O75056 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.97■□□□□ 0.95
SDC3O75056 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SDC3O75056 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SDC3O75056 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SDC3O75056 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.96■□□□□ 0.95
SDC3O75056 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SDC3O75056 SLC29A4P1-201ENST00000398760 971 ntBASIC20.96■□□□□ 0.95
SDC3O75056 CNN2P6-201ENST00000439038 900 ntBASIC20.96■□□□□ 0.95
SDC3O75056 AC138907.5-202ENST00000569484 235 ntBASIC20.96■□□□□ 0.95
SDC3O75056 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.96■□□□□ 0.95
SDC3O75056 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.96■□□□□ 0.95
SDC3O75056 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SDC3O75056 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SDC3O75056 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SDC3O75056 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.95■□□□□ 0.94
SDC3O75056 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SDC3O75056 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SDC3O75056 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SDC3O75056 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SDC3O75056 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.95■□□□□ 0.94
SDC3O75056 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SDC3O75056 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.95■□□□□ 0.94
SDC3O75056 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.95■□□□□ 0.94
SDC3O75056 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.95■□□□□ 0.94
SDC3O75056 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.95■□□□□ 0.94
SDC3O75056 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.95■□□□□ 0.94
SDC3O75056 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
SDC3O75056 AC010536.3-201ENST00000620306 533 ntBASIC20.95■□□□□ 0.94
SDC3O75056 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SDC3O75056 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SDC3O75056 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SDC3O75056 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SDC3O75056 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SDC3O75056 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.94■□□□□ 0.94
SDC3O75056 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SDC3O75056 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.94■□□□□ 0.94
SDC3O75056 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.94■□□□□ 0.94
SDC3O75056 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SDC3O75056 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SDC3O75056 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.94■□□□□ 0.94
SDC3O75056 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SDC3O75056 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDC3O75056 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SDC3O75056 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDC3O75056 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.93■□□□□ 0.94
SDC3O75056 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SDC3O75056 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SDC3O75056 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDC3O75056 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SDC3O75056 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SDC3O75056 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
SDC3O75056 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SDC3O75056 TSPY20P-201ENST00000450910 630 ntBASIC20.93■□□□□ 0.94
SDC3O75056 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SDC3O75056 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.93■□□□□ 0.94
SDC3O75056 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SDC3O75056 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.93■□□□□ 0.94
SDC3O75056 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.92■□□□□ 0.94
SDC3O75056 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SDC3O75056 AC105036.2-201ENST00000569468 176 ntBASIC20.92■□□□□ 0.94
SDC3O75056 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.92■□□□□ 0.94
SDC3O75056 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SDC3O75056 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.92■□□□□ 0.94
SDC3O75056 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 AP006587.3-201ENST00000525742 1516 ntBASIC20.92■□□□□ 0.94
SDC3O75056 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.92■□□□□ 0.94
SDC3O75056 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SDC3O75056 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SDC3O75056 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SDC3O75056 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.91■□□□□ 0.94
SDC3O75056 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.91■□□□□ 0.94
SDC3O75056 AF201337.1-201ENST00000520239 748 ntBASIC20.91■□□□□ 0.94
SDC3O75056 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SDC3O75056 AL034346.1-201ENST00000568244 1277 ntBASIC20.91■□□□□ 0.94
SDC3O75056 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.91■□□□□ 0.94
SDC3O75056 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.91■□□□□ 0.94
SDC3O75056 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
SDC3O75056 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.91■□□□□ 0.94
SDC3O75056 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SDC3O75056 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SDC3O75056 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC3O75056 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.9■□□□□ 0.94
SDC3O75056 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms