Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SGCEO43556 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SGCEO43556 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.87■□□□□ 0.61
SGCEO43556 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SGCEO43556 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.87■□□□□ 0.61
SGCEO43556 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SGCEO43556 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.86■□□□□ 0.61
SGCEO43556 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.86■□□□□ 0.61
SGCEO43556 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SGCEO43556 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 AC099791.1-201ENST00000416440 715 ntBASIC18.86■□□□□ 0.61
SGCEO43556 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.86■□□□□ 0.61
SGCEO43556 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.86■□□□□ 0.61
SGCEO43556 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 AL355001.2-201ENST00000620617 1191 ntBASIC18.86■□□□□ 0.61
SGCEO43556 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.86■□□□□ 0.61
SGCEO43556 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SGCEO43556 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.86■□□□□ 0.61
SGCEO43556 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SGCEO43556 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SGCEO43556 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SGCEO43556 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.85■□□□□ 0.61
SGCEO43556 AP001330.3-201ENST00000520123 633 ntBASIC18.85■□□□□ 0.61
SGCEO43556 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 AL139246.5-201ENST00000606645 996 ntBASIC18.85■□□□□ 0.61
SGCEO43556 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.85■□□□□ 0.61
SGCEO43556 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.85■□□□□ 0.61
SGCEO43556 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.85■□□□□ 0.61
SGCEO43556 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SGCEO43556 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.85■□□□□ 0.61
SGCEO43556 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SGCEO43556 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.84■□□□□ 0.61
SGCEO43556 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.84■□□□□ 0.61
SGCEO43556 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.84■□□□□ 0.61
SGCEO43556 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.84■□□□□ 0.61
SGCEO43556 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.84■□□□□ 0.61
SGCEO43556 IGHV3-19-201ENST00000521488 291 ntBASIC18.84■□□□□ 0.61
SGCEO43556 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.84■□□□□ 0.61
SGCEO43556 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.84■□□□□ 0.61
SGCEO43556 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.84■□□□□ 0.61
SGCEO43556 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 FAM99A-202ENST00000538190 1989 ntBASIC18.84■□□□□ 0.61
SGCEO43556 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.84■□□□□ 0.61
SGCEO43556 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.84■□□□□ 0.61
SGCEO43556 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SGCEO43556 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.83■□□□□ 0.61
SGCEO43556 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SGCEO43556 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SGCEO43556 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
SGCEO43556 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SGCEO43556 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.83■□□□□ 0.6
SGCEO43556 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.83■□□□□ 0.6
SGCEO43556 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
SGCEO43556 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.83■□□□□ 0.6
SGCEO43556 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SGCEO43556 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SGCEO43556 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SGCEO43556 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SGCEO43556 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SGCEO43556 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SGCEO43556 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SGCEO43556 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 AF213884.3-201ENST00000563833 479 ntBASIC18.82■□□□□ 0.6
SGCEO43556 AC133561.4-201ENST00000566112 224 ntBASIC18.82■□□□□ 0.6
SGCEO43556 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SGCEO43556 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms