Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDAC3O15379 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HDAC3O15379 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HDAC3O15379 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HDAC3O15379 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HDAC3O15379 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDAC3O15379 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDAC3O15379 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
HDAC3O15379 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HDAC3O15379 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
HDAC3O15379 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
HDAC3O15379 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDAC3O15379 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDAC3O15379 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.81■□□□□ 0.92
HDAC3O15379 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.81■□□□□ 0.92
HDAC3O15379 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.81■□□□□ 0.92
HDAC3O15379 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDAC3O15379 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.81■□□□□ 0.92
HDAC3O15379 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HDAC3O15379 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HDAC3O15379 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 OXCT2P1-201ENST00000447263 1535 ntBASIC20.8■□□□□ 0.92
HDAC3O15379 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HDAC3O15379 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.8■□□□□ 0.92
HDAC3O15379 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HDAC3O15379 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.8■□□□□ 0.92
HDAC3O15379 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.8■□□□□ 0.92
HDAC3O15379 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.8■□□□□ 0.92
HDAC3O15379 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HDAC3O15379 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
HDAC3O15379 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HDAC3O15379 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HDAC3O15379 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 AC068587.7-201ENST00000641602 218 ntBASIC20.79■□□□□ 0.92
HDAC3O15379 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.79■□□□□ 0.92
HDAC3O15379 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC3O15379 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.79■□□□□ 0.92
HDAC3O15379 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.79■□□□□ 0.92
HDAC3O15379 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC3O15379 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.78■□□□□ 0.92
HDAC3O15379 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
HDAC3O15379 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.78■□□□□ 0.92
HDAC3O15379 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC3O15379 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC3O15379 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.78■□□□□ 0.92
HDAC3O15379 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC3O15379 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC3O15379 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.78■□□□□ 0.92
HDAC3O15379 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC3O15379 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC3O15379 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.77■□□□□ 0.92
HDAC3O15379 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
HDAC3O15379 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 TSPY9P-201ENST00000440215 945 ntBASIC20.77■□□□□ 0.92
HDAC3O15379 TSPY11P-201ENST00000442607 1045 ntBASIC20.77■□□□□ 0.92
HDAC3O15379 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC3O15379 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.77■□□□□ 0.91
HDAC3O15379 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
HDAC3O15379 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC3O15379 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC3O15379 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC3O15379 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC3O15379 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC3O15379 pRNA.6-201ENST00000610482 90 ntBASIC20.76■□□□□ 0.91
HDAC3O15379 pRNA.5-201ENST00000612139 90 ntBASIC20.76■□□□□ 0.91
HDAC3O15379 pRNA.11-201ENST00000618423 90 ntBASIC20.76■□□□□ 0.91
HDAC3O15379 pRNA.13-201ENST00000619112 90 ntBASIC20.76■□□□□ 0.91
HDAC3O15379 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HDAC3O15379 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HDAC3O15379 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC3O15379 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.76■□□□□ 0.91
HDAC3O15379 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
HDAC3O15379 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC3O15379 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.76■□□□□ 0.91
HDAC3O15379 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.76■□□□□ 0.91
HDAC3O15379 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.76■□□□□ 0.91
HDAC3O15379 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms