Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 KRT18P14-201ENST00000534205 1250 ntBASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB1Q9Y5F3 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHB1Q9Y5F3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 C11orf96-202ENST00000528572 1834 ntBASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDHB1Q9Y5F3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 OXCT2P1-201ENST00000447263 1535 ntBASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
PCDHB1Q9Y5F3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.03
PCDHB1Q9Y5F3 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
PCDHB1Q9Y5F3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 TERF1P2-201ENST00000583350 1212 ntBASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHB1Q9Y5F3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 OR7E47P-201ENST00000546390 1422 ntBASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHB1Q9Y5F3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 LINC02228-203ENST00000641970 1355 ntBASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHB1Q9Y5F3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms