Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 BX842568.3-201ENST00000418104 571 ntBASIC20.67■□□□□ 0.9
VPS4AQ9UN37 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 AC241377.3-202ENST00000626088 1088 ntBASIC20.67■□□□□ 0.9
VPS4AQ9UN37 AC241585.3-202ENST00000628937 1088 ntBASIC20.67■□□□□ 0.9
VPS4AQ9UN37 AC245100.8-202ENST00000629247 1058 ntBASIC20.67■□□□□ 0.9
VPS4AQ9UN37 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 YBX1P1-201ENST00000445822 960 ntBASIC20.66■□□□□ 0.9
VPS4AQ9UN37 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS4AQ9UN37 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 AC004911.1-201ENST00000416316 871 ntBASIC20.65■□□□□ 0.9
VPS4AQ9UN37 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS4AQ9UN37 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS4AQ9UN37 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS4AQ9UN37 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS4AQ9UN37 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.64■□□□□ 0.9
VPS4AQ9UN37 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 AL137060.1-201ENST00000618151 2648 ntBASIC20.64■□□□□ 0.89
VPS4AQ9UN37 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
VPS4AQ9UN37 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS4AQ9UN37 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 FBXW4P1-201ENST00000426721 2239 ntBASIC20.62■□□□□ 0.89
VPS4AQ9UN37 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 AC126544.1-201ENST00000580842 1059 ntBASIC20.62■□□□□ 0.89
VPS4AQ9UN37 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS4AQ9UN37 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms