Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC24.66■■□□□ 1.54
DDX41Q9UJV9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC24.66■■□□□ 1.54
DDX41Q9UJV9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC24.66■■□□□ 1.54
DDX41Q9UJV9 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX41Q9UJV9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX41Q9UJV9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DDX41Q9UJV9 OXCT2P1-201ENST00000447263 1535 ntBASIC24.66■■□□□ 1.54
DDX41Q9UJV9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.66■■□□□ 1.54
DDX41Q9UJV9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 DUSP8P3-201ENST00000399571 1760 ntBASIC24.65■■□□□ 1.54
DDX41Q9UJV9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 AC092068.2-201ENST00000590491 1708 ntBASIC24.65■■□□□ 1.54
DDX41Q9UJV9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DDX41Q9UJV9 AC127496.7-201ENST00000625110 1798 ntBASIC24.65■■□□□ 1.54
DDX41Q9UJV9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.64■■□□□ 1.54
DDX41Q9UJV9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX41Q9UJV9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX41Q9UJV9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.64■■□□□ 1.53
DDX41Q9UJV9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC24.64■■□□□ 1.53
DDX41Q9UJV9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX41Q9UJV9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DDX41Q9UJV9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
DDX41Q9UJV9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.62■■□□□ 1.53
DDX41Q9UJV9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DDX41Q9UJV9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DDX41Q9UJV9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX41Q9UJV9 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX41Q9UJV9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC24.59■■□□□ 1.53
DDX41Q9UJV9 AP004607.4-201ENST00000530158 1459 ntBASIC24.59■■□□□ 1.53
DDX41Q9UJV9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
DDX41Q9UJV9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
DDX41Q9UJV9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
DDX41Q9UJV9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms