Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 AC068587.7-201ENST00000641602 218 ntBASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 AL024507.2-201ENST00000606070 2574 ntBASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SEC61A2Q9H9S3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SEC61A2Q9H9S3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SEC61A2Q9H9S3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SEC61A2Q9H9S3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 BX842568.3-201ENST00000418104 571 ntBASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 AC027682.1-201ENST00000562846 899 ntBASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.18■□□□□ 0.66
SEC61A2Q9H9S3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 ZNRF2P3-201ENST00000424200 374 ntBASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 AC091305.1-201ENST00000479476 895 ntBASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 AC079089.2-201ENST00000531211 1277 ntBASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 AC233992.3-201ENST00000607491 485 ntBASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SEC61A2Q9H9S3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 AC105265.2-201ENST00000467189 838 ntBASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEC61A2Q9H9S3 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SEC61A2Q9H9S3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms