Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRRC40Q9H9A6 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 AL034346.1-201ENST00000568244 1277 ntBASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRC40Q9H9A6 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
LRRC40Q9H9A6 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.78■■□□□ 1.08
LRRC40Q9H9A6 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 PBX2P1-201ENST00000493219 1291 ntBASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 AC133561.4-201ENST00000566112 224 ntBASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 AC126544.1-201ENST00000580842 1059 ntBASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC40Q9H9A6 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
LRRC40Q9H9A6 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
LRRC40Q9H9A6 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 AC244015.2-201ENST00000616358 1861 ntBASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 AC106739.1-201ENST00000617035 715 ntBASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
LRRC40Q9H9A6 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC40Q9H9A6 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 IGHV3-19-201ENST00000521488 291 ntBASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 AC008764.7-201ENST00000593779 1081 ntBASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 AP004607.7-201ENST00000527152 1677 ntBASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 AC026471.6-201ENST00000622954 1905 ntBASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
LRRC40Q9H9A6 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms