Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIME1Q9H400 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.87■□□□□ 0.61
LIME1Q9H400 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
LIME1Q9H400 AC011767.1-201ENST00000617410 1153 ntBASIC18.87■□□□□ 0.61
LIME1Q9H400 AC066615.1-201ENST00000640911 628 ntBASIC18.87■□□□□ 0.61
LIME1Q9H400 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LIME1Q9H400 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
LIME1Q9H400 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIME1Q9H400 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIME1Q9H400 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIME1Q9H400 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
LIME1Q9H400 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LIME1Q9H400 TSPY20P-201ENST00000450910 630 ntBASIC18.86■□□□□ 0.61
LIME1Q9H400 CD99P1-205ENST00000527459 561 ntBASIC18.86■□□□□ 0.61
LIME1Q9H400 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.86■□□□□ 0.61
LIME1Q9H400 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIME1Q9H400 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIME1Q9H400 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIME1Q9H400 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIME1Q9H400 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIME1Q9H400 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
LIME1Q9H400 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.86■□□□□ 0.61
LIME1Q9H400 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
LIME1Q9H400 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.85■□□□□ 0.61
LIME1Q9H400 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.85■□□□□ 0.61
LIME1Q9H400 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIME1Q9H400 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.85■□□□□ 0.61
LIME1Q9H400 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.85■□□□□ 0.61
LIME1Q9H400 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.85■□□□□ 0.61
LIME1Q9H400 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
LIME1Q9H400 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 LINC01529-204ENST00000636474 1715 ntBASIC18.85■□□□□ 0.61
LIME1Q9H400 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.85■□□□□ 0.61
LIME1Q9H400 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIME1Q9H400 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
LIME1Q9H400 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
LIME1Q9H400 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
LIME1Q9H400 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIME1Q9H400 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIME1Q9H400 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.84■□□□□ 0.61
LIME1Q9H400 GPX1P1-201ENST00000388829 606 ntBASIC18.84■□□□□ 0.61
LIME1Q9H400 KRT19P1-201ENST00000405746 1186 ntBASIC18.84■□□□□ 0.61
LIME1Q9H400 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.84■□□□□ 0.61
LIME1Q9H400 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
LIME1Q9H400 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.84■□□□□ 0.61
LIME1Q9H400 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LIME1Q9H400 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIME1Q9H400 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LIME1Q9H400 BX005040.4-201ENST00000637145 1518 ntBASIC18.84■□□□□ 0.61
LIME1Q9H400 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LIME1Q9H400 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.84■□□□□ 0.61
LIME1Q9H400 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LIME1Q9H400 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.61
LIME1Q9H400 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LIME1Q9H400 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
LIME1Q9H400 AC144652.1-201ENST00000609974 1624 ntBASIC18.83■□□□□ 0.61
LIME1Q9H400 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIME1Q9H400 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIME1Q9H400 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIME1Q9H400 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LIME1Q9H400 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIME1Q9H400 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.83■□□□□ 0.6
LIME1Q9H400 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.83■□□□□ 0.6
LIME1Q9H400 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.83■□□□□ 0.6
LIME1Q9H400 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIME1Q9H400 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIME1Q9H400 ECEL1P1-201ENST00000373592 1742 ntBASIC18.83■□□□□ 0.6
LIME1Q9H400 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
LIME1Q9H400 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIME1Q9H400 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIME1Q9H400 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms