Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 KRT18P6-201ENST00000555540 1265 ntBASIC21.6■■□□□ 1.05
HMGB4Q8WW32 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 OR7E47P-201ENST00000546390 1422 ntBASIC21.6■■□□□ 1.05
HMGB4Q8WW32 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGB4Q8WW32 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 CNN2P6-201ENST00000439038 900 ntBASIC21.59■■□□□ 1.05
HMGB4Q8WW32 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 AC138907.5-202ENST00000569484 235 ntBASIC21.59■■□□□ 1.05
HMGB4Q8WW32 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 AC010536.3-201ENST00000620306 533 ntBASIC21.59■■□□□ 1.05
HMGB4Q8WW32 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.59■■□□□ 1.05
HMGB4Q8WW32 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 AF201337.1-201ENST00000520239 748 ntBASIC21.58■■□□□ 1.05
HMGB4Q8WW32 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGB4Q8WW32 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGB4Q8WW32 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HMGB4Q8WW32 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.58■■□□□ 1.04
HMGB4Q8WW32 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 AC105036.2-201ENST00000569468 176 ntBASIC21.57■■□□□ 1.04
HMGB4Q8WW32 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB4Q8WW32 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 KRT18P20-201ENST00000548986 1279 ntBASIC21.56■■□□□ 1.04
HMGB4Q8WW32 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB4Q8WW32 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB4Q8WW32 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
HMGB4Q8WW32 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms