Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 C1QBPP2-201ENST00000528754 825 ntBASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC25.77■■□□□ 1.72
SMC1BQ8NDV3 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 CYP2T3P-201ENST00000601990 817 ntBASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 AL445228.2-201ENST00000605589 952 ntBASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SMC1BQ8NDV3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
SMC1BQ8NDV3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SMC1BQ8NDV3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC25.75■■□□□ 1.71
SMC1BQ8NDV3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SMC1BQ8NDV3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.75■■□□□ 1.71
SMC1BQ8NDV3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.75■■□□□ 1.71
SMC1BQ8NDV3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.75■■□□□ 1.71
SMC1BQ8NDV3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SMC1BQ8NDV3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 SERPINH1P1-201ENST00000419794 1249 ntBASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 OR2A1-AS1-201ENST00000462305 773 ntBASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.73■■□□□ 1.71
SMC1BQ8NDV3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 AC008403.3-201ENST00000598924 454 ntBASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SMC1BQ8NDV3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 AC010980.2-201ENST00000587099 1412 ntBASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SMC1BQ8NDV3 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
SMC1BQ8NDV3 AC055733.4-201ENST00000638462 1354 ntBASIC25.7■■□□□ 1.71
SMC1BQ8NDV3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMC1BQ8NDV3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMC1BQ8NDV3 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMC1BQ8NDV3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMC1BQ8NDV3 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.7■■□□□ 1.7
SMC1BQ8NDV3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMC1BQ8NDV3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMC1BQ8NDV3 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 AC133561.5-201ENST00000635547 218 ntBASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 AL121749.1-202ENST00000609313 2153 ntBASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SMC1BQ8NDV3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.68■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms