Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 PKD1P6-201ENST00000343738 4769 ntBASIC20.25■□□□□ 0.83
CCDC116Q8IYX3 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CCDC116Q8IYX3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC116Q8IYX3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCDC116Q8IYX3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC116Q8IYX3 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 MIR939-201ENST00000401314 82 ntBASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC116Q8IYX3 RASA4CP-201ENST00000424092 1398 ntBASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 SUDS3P1-201ENST00000505831 966 ntBASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 TSPY26P-201ENST00000476365 1326 ntBASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC116Q8IYX3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC116Q8IYX3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 AC091305.1-201ENST00000479476 895 ntBASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 AP004607.7-201ENST00000527152 1677 ntBASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 AC010542.4-201ENST00000563151 1910 ntBASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 AC026471.6-201ENST00000622954 1905 ntBASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC116Q8IYX3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.2■□□□□ 0.83
CCDC116Q8IYX3 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC116Q8IYX3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 AC142381.2-201ENST00000566120 298 ntBASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 SMUG1P1-201ENST00000590640 811 ntBASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 AC005837.3-201ENST00000612163 286 ntBASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC116Q8IYX3 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC116Q8IYX3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms