Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HIST1H1AQ02539 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HIST1H1AQ02539 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HIST1H1AQ02539 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HIST1H1AQ02539 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.33■□□□□ 0.21
HIST1H1AQ02539 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HIST1H1AQ02539 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.33■□□□□ 0.21
HIST1H1AQ02539 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.33■□□□□ 0.21
HIST1H1AQ02539 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HIST1H1AQ02539 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 AL499627.2-201ENST00000606283 725 ntBASIC16.32■□□□□ 0.2
HIST1H1AQ02539 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HIST1H1AQ02539 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 pRNA.6-201ENST00000610482 90 ntBASIC16.31■□□□□ 0.2
HIST1H1AQ02539 pRNA.5-201ENST00000612139 90 ntBASIC16.31■□□□□ 0.2
HIST1H1AQ02539 pRNA.11-201ENST00000618423 90 ntBASIC16.31■□□□□ 0.2
HIST1H1AQ02539 pRNA.13-201ENST00000619112 90 ntBASIC16.31■□□□□ 0.2
HIST1H1AQ02539 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
HIST1H1AQ02539 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIST1H1AQ02539 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.29■□□□□ 0.2
HIST1H1AQ02539 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms