Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ISCU-212ENST00000547005 795 ntTSL 3 BASIC30.1■■■□□ 2.41
MSH6P52701 AC073912.3-201ENST00000624414 853 ntBASIC30.1■■■□□ 2.41
MSH6P52701 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
MSH6P52701 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC30.1■■■□□ 2.41
MSH6P52701 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
MSH6P52701 FXN-202ENST00000396364 980 ntTSL 5 BASIC30.09■■■□□ 2.41
MSH6P52701 ECEL1P3-201ENST00000427961 737 ntBASIC30.09■■■□□ 2.41
MSH6P52701 FAM210CP-201ENST00000445714 574 ntBASIC30.09■■■□□ 2.41
MSH6P52701 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
MSH6P52701 UBE2SP1-201ENST00000450587 669 ntBASIC30.09■■■□□ 2.41
MSH6P52701 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC30.09■■■□□ 2.41
MSH6P52701 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC30.09■■■□□ 2.41
MSH6P52701 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC30.09■■■□□ 2.41
MSH6P52701 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
MSH6P52701 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC30.08■■■□□ 2.41
MSH6P52701 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC30.08■■■□□ 2.41
MSH6P52701 NAA20-201ENST00000310450 920 ntTSL 2 BASIC30.08■■■□□ 2.41
MSH6P52701 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
MSH6P52701 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC30.08■■■□□ 2.41
MSH6P52701 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC30.08■■■□□ 2.41
MSH6P52701 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
MSH6P52701 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
MSH6P52701 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
MSH6P52701 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
MSH6P52701 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC30.08■■■□□ 2.41
MSH6P52701 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
MSH6P52701 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
MSH6P52701 DUSP8P3-201ENST00000399571 1760 ntBASIC30.07■■■□□ 2.4
MSH6P52701 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
MSH6P52701 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
MSH6P52701 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC30.07■■■□□ 2.4
MSH6P52701 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
MSH6P52701 AL353803.4-201ENST00000565882 1934 ntBASIC30.07■■■□□ 2.4
MSH6P52701 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
MSH6P52701 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
MSH6P52701 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
MSH6P52701 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
MSH6P52701 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
MSH6P52701 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
MSH6P52701 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
MSH6P52701 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
MSH6P52701 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC30.06■■■□□ 2.4
MSH6P52701 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC30.06■■■□□ 2.4
MSH6P52701 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC30.06■■■□□ 2.4
MSH6P52701 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
MSH6P52701 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
MSH6P52701 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC30.05■■■□□ 2.4
MSH6P52701 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
MSH6P52701 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC30.05■■■□□ 2.4
MSH6P52701 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC30.05■■■□□ 2.4
MSH6P52701 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
MSH6P52701 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
MSH6P52701 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
MSH6P52701 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
MSH6P52701 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
MSH6P52701 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
MSH6P52701 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
MSH6P52701 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC30.04■■■□□ 2.4
MSH6P52701 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC30.04■■■□□ 2.4
MSH6P52701 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC30.04■■■□□ 2.4
MSH6P52701 AC010331.1-201ENST00000611423 582 ntBASIC30.04■■■□□ 2.4
MSH6P52701 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
MSH6P52701 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
MSH6P52701 AC022211.4-201ENST00000625094 2161 ntBASIC30.04■■■□□ 2.4
MSH6P52701 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
MSH6P52701 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
MSH6P52701 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
MSH6P52701 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
MSH6P52701 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC30.03■■■□□ 2.4
MSH6P52701 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
MSH6P52701 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC30.03■■■□□ 2.4
MSH6P52701 AL359736.2-201ENST00000621992 437 ntBASIC30.03■■■□□ 2.4
MSH6P52701 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC30.03■■■□□ 2.4
MSH6P52701 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.4
MSH6P52701 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC30.03■■■□□ 2.4
MSH6P52701 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC30.03■■■□□ 2.4
MSH6P52701 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
MSH6P52701 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC30.03■■■□□ 2.4
MSH6P52701 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
MSH6P52701 MIR718-201ENST00000390190 70 ntBASIC30.03■■■□□ 2.4
MSH6P52701 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC30.03■■■□□ 2.4
MSH6P52701 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC30.03■■■□□ 2.4
MSH6P52701 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC30.03■■■□□ 2.4
MSH6P52701 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
MSH6P52701 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
MSH6P52701 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
MSH6P52701 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
MSH6P52701 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC30.02■■■□□ 2.4
MSH6P52701 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC30.02■■■□□ 2.4
MSH6P52701 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
MSH6P52701 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC30.01■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms