Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.8■□□□□ 0.92
HNF4AP41235 AC027682.1-201ENST00000562846 899 ntBASIC20.8■□□□□ 0.92
HNF4AP41235 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 AL136967.2-201ENST00000623968 743 ntBASIC20.8■□□□□ 0.92
HNF4AP41235 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
HNF4AP41235 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.8■□□□□ 0.92
HNF4AP41235 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HNF4AP41235 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
HNF4AP41235 FAM99A-202ENST00000538190 1989 ntBASIC20.79■□□□□ 0.92
HNF4AP41235 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HNF4AP41235 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HNF4AP41235 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HNF4AP41235 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
HNF4AP41235 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HNF4AP41235 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.79■□□□□ 0.92
HNF4AP41235 MIR939-201ENST00000401314 82 ntBASIC20.79■□□□□ 0.92
HNF4AP41235 SUDS3P1-201ENST00000505831 966 ntBASIC20.79■□□□□ 0.92
HNF4AP41235 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HNF4AP41235 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.79■□□□□ 0.92
HNF4AP41235 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.79■□□□□ 0.92
HNF4AP41235 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.79■□□□□ 0.92
HNF4AP41235 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HNF4AP41235 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.78■□□□□ 0.92
HNF4AP41235 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HNF4AP41235 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HNF4AP41235 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.78■□□□□ 0.92
HNF4AP41235 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HNF4AP41235 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HNF4AP41235 FBXW4P1-201ENST00000426721 2239 ntBASIC20.77■□□□□ 0.92
HNF4AP41235 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
HNF4AP41235 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
HNF4AP41235 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HNF4AP41235 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.77■□□□□ 0.92
HNF4AP41235 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HNF4AP41235 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
HNF4AP41235 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HNF4AP41235 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.77■□□□□ 0.91
HNF4AP41235 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.77■□□□□ 0.91
HNF4AP41235 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HNF4AP41235 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
HNF4AP41235 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HNF4AP41235 RASA4CP-201ENST00000424092 1398 ntBASIC20.76■□□□□ 0.91
HNF4AP41235 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HNF4AP41235 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.76■□□□□ 0.91
HNF4AP41235 AC091305.1-201ENST00000479476 895 ntBASIC20.76■□□□□ 0.91
HNF4AP41235 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
HNF4AP41235 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HNF4AP41235 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HNF4AP41235 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.76■□□□□ 0.91
HNF4AP41235 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HNF4AP41235 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HNF4AP41235 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 AC010542.4-201ENST00000563151 1910 ntBASIC20.75■□□□□ 0.91
HNF4AP41235 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HNF4AP41235 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HNF4AP41235 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.75■□□□□ 0.91
HNF4AP41235 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.75■□□□□ 0.91
HNF4AP41235 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.75■□□□□ 0.91
HNF4AP41235 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.75■□□□□ 0.91
HNF4AP41235 AL034346.1-201ENST00000568244 1277 ntBASIC20.75■□□□□ 0.91
HNF4AP41235 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HNF4AP41235 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.75■□□□□ 0.91
HNF4AP41235 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 TSPY26P-201ENST00000476365 1326 ntBASIC20.75■□□□□ 0.91
HNF4AP41235 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HNF4AP41235 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.74■□□□□ 0.91
HNF4AP41235 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.74■□□□□ 0.91
HNF4AP41235 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HNF4AP41235 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.74■□□□□ 0.91
HNF4AP41235 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms