Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
HADHAP40939 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.7■■□□□ 1.06
HADHAP40939 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 AC008764.7-201ENST00000593779 1081 ntBASIC21.7■■□□□ 1.06
HADHAP40939 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.7■■□□□ 1.06
HADHAP40939 AC007375.3-201ENST00000600936 2314 ntBASIC21.7■■□□□ 1.06
HADHAP40939 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HADHAP40939 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
HADHAP40939 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.69■■□□□ 1.06
HADHAP40939 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.69■■□□□ 1.06
HADHAP40939 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
HADHAP40939 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HADHAP40939 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HADHAP40939 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.68■■□□□ 1.06
HADHAP40939 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HADHAP40939 AC099791.1-201ENST00000416440 715 ntBASIC21.68■■□□□ 1.06
HADHAP40939 AP001330.3-201ENST00000520123 633 ntBASIC21.68■■□□□ 1.06
HADHAP40939 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.68■■□□□ 1.06
HADHAP40939 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.68■■□□□ 1.06
HADHAP40939 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.68■■□□□ 1.06
HADHAP40939 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HADHAP40939 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HADHAP40939 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
HADHAP40939 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.68■■□□□ 1.06
HADHAP40939 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HADHAP40939 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HADHAP40939 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HADHAP40939 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
HADHAP40939 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
HADHAP40939 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.67■■□□□ 1.06
HADHAP40939 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.67■■□□□ 1.06
HADHAP40939 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.67■■□□□ 1.06
HADHAP40939 AC091305.1-201ENST00000479476 895 ntBASIC21.67■■□□□ 1.06
HADHAP40939 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.67■■□□□ 1.06
HADHAP40939 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HADHAP40939 AC010542.4-201ENST00000563151 1910 ntBASIC21.67■■□□□ 1.06
HADHAP40939 RASA4CP-201ENST00000424092 1398 ntBASIC21.66■■□□□ 1.06
HADHAP40939 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HADHAP40939 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
HADHAP40939 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HADHAP40939 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HADHAP40939 MIR939-201ENST00000401314 82 ntBASIC21.66■■□□□ 1.06
HADHAP40939 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HADHAP40939 OR7E47P-201ENST00000546390 1422 ntBASIC21.65■■□□□ 1.06
HADHAP40939 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 IGHV3-19-201ENST00000521488 291 ntBASIC21.65■■□□□ 1.06
HADHAP40939 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.65■■□□□ 1.06
HADHAP40939 AF213884.3-201ENST00000563833 479 ntBASIC21.65■■□□□ 1.06
HADHAP40939 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.65■■□□□ 1.06
HADHAP40939 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 AL031432.3-201ENST00000607698 485 ntBASIC21.65■■□□□ 1.06
HADHAP40939 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HADHAP40939 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.65■■□□□ 1.06
HADHAP40939 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
HADHAP40939 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HADHAP40939 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HADHAP40939 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.64■■□□□ 1.06
HADHAP40939 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.64■■□□□ 1.06
HADHAP40939 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.64■■□□□ 1.05
HADHAP40939 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.64■■□□□ 1.05
HADHAP40939 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.64■■□□□ 1.05
HADHAP40939 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HADHAP40939 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.64■■□□□ 1.05
HADHAP40939 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HADHAP40939 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.64■■□□□ 1.05
HADHAP40939 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
HADHAP40939 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms