Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC28.72■■■□□ 2.19
RXRBP28702 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC28.72■■■□□ 2.19
RXRBP28702 TMEM202-AS1-202ENST00000565181 2325 ntBASIC28.72■■■□□ 2.19
RXRBP28702 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RXRBP28702 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC28.71■■■□□ 2.19
RXRBP28702 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RXRBP28702 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RXRBP28702 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC28.71■■■□□ 2.19
RXRBP28702 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC28.71■■■□□ 2.19
RXRBP28702 TSPY7P-201ENST00000431358 1114 ntBASIC28.71■■■□□ 2.19
RXRBP28702 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC28.71■■■□□ 2.19
RXRBP28702 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC28.71■■■□□ 2.19
RXRBP28702 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
RXRBP28702 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC28.71■■■□□ 2.19
RXRBP28702 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC28.71■■■□□ 2.19
RXRBP28702 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC28.71■■■□□ 2.19
RXRBP28702 AC055733.4-201ENST00000638462 1354 ntBASIC28.71■■■□□ 2.19
RXRBP28702 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.19
RXRBP28702 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.19
RXRBP28702 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC28.7■■■□□ 2.18
RXRBP28702 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC28.7■■■□□ 2.18
RXRBP28702 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.18
RXRBP28702 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
RXRBP28702 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
RXRBP28702 C2orf69P4-201ENST00000565394 541 ntBASIC28.7■■■□□ 2.18
RXRBP28702 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC28.7■■■□□ 2.18
RXRBP28702 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.7■■■□□ 2.18
RXRBP28702 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
RXRBP28702 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
RXRBP28702 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC28.7■■■□□ 2.18
RXRBP28702 AC092803.2-201ENST00000564287 1899 ntBASIC28.7■■■□□ 2.18
RXRBP28702 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RXRBP28702 USP45-205ENST00000472914 1617 ntTSL 5 BASIC28.69■■■□□ 2.18
RXRBP28702 KRT17P3-201ENST00000420566 1262 ntBASIC28.69■■■□□ 2.18
RXRBP28702 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
RXRBP28702 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC28.69■■■□□ 2.18
RXRBP28702 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC28.69■■■□□ 2.18
RXRBP28702 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC28.68■■■□□ 2.18
RXRBP28702 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
RXRBP28702 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC28.68■■■□□ 2.18
RXRBP28702 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
RXRBP28702 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.68■■■□□ 2.18
RXRBP28702 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
RXRBP28702 NAA20-201ENST00000310450 920 ntTSL 2 BASIC28.67■■■□□ 2.18
RXRBP28702 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RXRBP28702 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RXRBP28702 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
RXRBP28702 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC28.67■■■□□ 2.18
RXRBP28702 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC28.66■■■□□ 2.18
RXRBP28702 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
RXRBP28702 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
RXRBP28702 AC012618.2-201ENST00000428058 849 ntBASIC28.66■■■□□ 2.18
RXRBP28702 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC28.66■■■□□ 2.18
RXRBP28702 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC28.66■■■□□ 2.18
RXRBP28702 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
RXRBP28702 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC28.66■■■□□ 2.18
RXRBP28702 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC28.66■■■□□ 2.18
RXRBP28702 AC233702.5-201ENST00000584107 538 ntBASIC28.66■■■□□ 2.18
RXRBP28702 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
RXRBP28702 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RXRBP28702 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RXRBP28702 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
RXRBP28702 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC28.65■■■□□ 2.18
RXRBP28702 TPM1-226ENST00000560959 925 ntTSL 2 BASIC28.65■■■□□ 2.18
RXRBP28702 RN7SL850P-201ENST00000579959 291 ntBASIC28.65■■■□□ 2.18
RXRBP28702 CD177P1-201ENST00000606252 935 ntBASIC28.65■■■□□ 2.18
RXRBP28702 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
RXRBP28702 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RXRBP28702 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
RXRBP28702 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
RXRBP28702 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
RXRBP28702 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
RXRBP28702 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
RXRBP28702 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC28.64■■■□□ 2.18
RXRBP28702 PRKY-204ENST00000533551 1019 ntBASIC28.64■■■□□ 2.18
RXRBP28702 AC060766.5-201ENST00000590539 871 ntBASIC28.64■■■□□ 2.18
RXRBP28702 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
RXRBP28702 AL590326.2-201ENST00000625139 305 ntBASIC28.64■■■□□ 2.18
RXRBP28702 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
RXRBP28702 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC28.64■■■□□ 2.17
RXRBP28702 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
RXRBP28702 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
RXRBP28702 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC28.63■■■□□ 2.17
RXRBP28702 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC28.63■■■□□ 2.17
RXRBP28702 BRWD1-AS2-201ENST00000603064 1028 ntBASIC28.63■■■□□ 2.17
RXRBP28702 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
RXRBP28702 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
RXRBP28702 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC28.63■■■□□ 2.17
RXRBP28702 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
RXRBP28702 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
RXRBP28702 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RXRBP28702 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
RXRBP28702 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RXRBP28702 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RXRBP28702 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC28.62■■■□□ 2.17
RXRBP28702 LSM12P1-201ENST00000411836 588 ntBASIC28.62■■■□□ 2.17
RXRBP28702 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
RXRBP28702 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
RXRBP28702 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC28.62■■■□□ 2.17
RXRBP28702 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC28.62■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms