Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A1P20908 EEF1DP3-203ENST00000566025 782 ntBASIC20.82■□□□□ 0.92
COL5A1P20908 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.82■□□□□ 0.92
COL5A1P20908 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A1P20908 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A1P20908 AC068338.2-201ENST00000563278 1430 ntBASIC20.82■□□□□ 0.92
COL5A1P20908 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A1P20908 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A1P20908 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A1P20908 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A1P20908 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
COL5A1P20908 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
COL5A1P20908 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.81■□□□□ 0.92
COL5A1P20908 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.81■□□□□ 0.92
COL5A1P20908 LINC01960-201ENST00000563759 1884 ntBASIC20.81■□□□□ 0.92
COL5A1P20908 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A1P20908 SLC7A5P1-201ENST00000568957 537 ntBASIC20.81■□□□□ 0.92
COL5A1P20908 MKRN4P-201ENST00000444706 1521 ntBASIC20.8■□□□□ 0.92
COL5A1P20908 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL5A1P20908 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A1P20908 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.8■□□□□ 0.92
COL5A1P20908 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.8■□□□□ 0.92
COL5A1P20908 AC079089.2-201ENST00000531211 1277 ntBASIC20.8■□□□□ 0.92
COL5A1P20908 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.8■□□□□ 0.92
COL5A1P20908 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
COL5A1P20908 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL5A1P20908 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A1P20908 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A1P20908 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A1P20908 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A1P20908 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A1P20908 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A1P20908 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.79■□□□□ 0.92
COL5A1P20908 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
COL5A1P20908 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A1P20908 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A1P20908 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A1P20908 AP004607.7-201ENST00000527152 1677 ntBASIC20.79■□□□□ 0.92
COL5A1P20908 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A1P20908 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
COL5A1P20908 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.78■□□□□ 0.92
COL5A1P20908 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.78■□□□□ 0.92
COL5A1P20908 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A1P20908 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
COL5A1P20908 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A1P20908 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL5A1P20908 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A1P20908 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A1P20908 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.78■□□□□ 0.92
COL5A1P20908 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A1P20908 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A1P20908 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.78■□□□□ 0.92
COL5A1P20908 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.78■□□□□ 0.92
COL5A1P20908 MIR4758-201ENST00000577688 71 ntBASIC20.78■□□□□ 0.92
COL5A1P20908 AC008687.6-201ENST00000596318 630 ntBASIC20.78■□□□□ 0.92
COL5A1P20908 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A1P20908 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A1P20908 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A1P20908 ANOS2P-203ENST00000472227 1816 ntBASIC20.77■□□□□ 0.92
COL5A1P20908 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A1P20908 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL5A1P20908 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A1P20908 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A1P20908 RNA5SP413-201ENST00000516373 109 ntBASIC20.77■□□□□ 0.92
COL5A1P20908 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.77■□□□□ 0.92
COL5A1P20908 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A1P20908 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A1P20908 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COL5A1P20908 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL5A1P20908 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A1P20908 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.77■□□□□ 0.91
COL5A1P20908 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL5A1P20908 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
COL5A1P20908 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.76■□□□□ 0.91
COL5A1P20908 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A1P20908 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.76■□□□□ 0.91
COL5A1P20908 OR10C1-204ENST00000622521 1039 ntBASIC20.76■□□□□ 0.91
COL5A1P20908 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.76■□□□□ 0.91
COL5A1P20908 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
COL5A1P20908 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COL5A1P20908 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A1P20908 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A1P20908 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.76■□□□□ 0.91
COL5A1P20908 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A1P20908 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.76■□□□□ 0.91
COL5A1P20908 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
COL5A1P20908 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.76■□□□□ 0.91
COL5A1P20908 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL5A1P20908 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A1P20908 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.76■□□□□ 0.91
COL5A1P20908 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.75■□□□□ 0.91
COL5A1P20908 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.75■□□□□ 0.91
COL5A1P20908 AP006587.3-201ENST00000525742 1516 ntBASIC20.75■□□□□ 0.91
COL5A1P20908 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL5A1P20908 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COL5A1P20908 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
COL5A1P20908 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL5A1P20908 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A1P20908 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A1P20908 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms