Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 LINC01006-201ENST00000333319 2292 ntBASIC19.09■□□□□ 0.65
LIMS3P0CW19 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMS3P0CW19 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.08■□□□□ 0.65
LIMS3P0CW19 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMS3P0CW19 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMS3P0CW19 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMS3P0CW19 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.08■□□□□ 0.65
LIMS3P0CW19 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMS3P0CW19 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMS3P0CW19 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.08■□□□□ 0.65
LIMS3P0CW19 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIMS3P0CW19 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.08■□□□□ 0.65
LIMS3P0CW19 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMS3P0CW19 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
LIMS3P0CW19 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMS3P0CW19 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
LIMS3P0CW19 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMS3P0CW19 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
LIMS3P0CW19 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMS3P0CW19 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.08■□□□□ 0.64
LIMS3P0CW19 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMS3P0CW19 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.08■□□□□ 0.64
LIMS3P0CW19 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMS3P0CW19 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMS3P0CW19 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMS3P0CW19 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMS3P0CW19 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMS3P0CW19 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LIMS3P0CW19 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMS3P0CW19 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMS3P0CW19 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMS3P0CW19 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMS3P0CW19 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIMS3P0CW19 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMS3P0CW19 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMS3P0CW19 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMS3P0CW19 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMS3P0CW19 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMS3P0CW19 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMS3P0CW19 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIMS3P0CW19 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMS3P0CW19 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIMS3P0CW19 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.05■□□□□ 0.64
LIMS3P0CW19 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIMS3P0CW19 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMS3P0CW19 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMS3P0CW19 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMS3P0CW19 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMS3P0CW19 BX664725.1-201ENST00000438252 379 ntBASIC19.04■□□□□ 0.64
LIMS3P0CW19 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMS3P0CW19 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.04■□□□□ 0.64
LIMS3P0CW19 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.04■□□□□ 0.64
LIMS3P0CW19 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIMS3P0CW19 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
LIMS3P0CW19 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIMS3P0CW19 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
LIMS3P0CW19 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.03■□□□□ 0.64
LIMS3P0CW19 FEM1AP1-201ENST00000431297 1995 ntBASIC19.03■□□□□ 0.64
LIMS3P0CW19 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 OR7E47P-201ENST00000546390 1422 ntBASIC19.03■□□□□ 0.64
LIMS3P0CW19 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIMS3P0CW19 AC092028.1-203ENST00000608262 953 ntBASIC19.03■□□□□ 0.64
LIMS3P0CW19 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 OXCT2P1-201ENST00000447263 1535 ntBASIC19.03■□□□□ 0.64
LIMS3P0CW19 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIMS3P0CW19 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LIMS3P0CW19 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMS3P0CW19 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LIMS3P0CW19 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms