Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC053503.5-201ENST00000601508 636 ntBASIC21.08■□□□□ 0.97
HOXC4P09017 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.08■□□□□ 0.97
HOXC4P09017 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC4P09017 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC4P09017 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC4P09017 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HOXC4P09017 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC4P09017 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.07■□□□□ 0.96
HOXC4P09017 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.07■□□□□ 0.96
HOXC4P09017 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC4P09017 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC4P09017 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.07■□□□□ 0.96
HOXC4P09017 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC4P09017 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.07■□□□□ 0.96
HOXC4P09017 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.07■□□□□ 0.96
HOXC4P09017 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC4P09017 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HOXC4P09017 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
HOXC4P09017 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
HOXC4P09017 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.06■□□□□ 0.96
HOXC4P09017 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.06■□□□□ 0.96
HOXC4P09017 AC010141.2-201ENST00000452426 721 ntBASIC21.06■□□□□ 0.96
HOXC4P09017 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
HOXC4P09017 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.06■□□□□ 0.96
HOXC4P09017 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC4P09017 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.06■□□□□ 0.96
HOXC4P09017 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.06■□□□□ 0.96
HOXC4P09017 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
HOXC4P09017 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.06■□□□□ 0.96
HOXC4P09017 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HOXC4P09017 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.05■□□□□ 0.96
HOXC4P09017 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
HOXC4P09017 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 RAP2CP1-201ENST00000605103 478 ntBASIC21.05■□□□□ 0.96
HOXC4P09017 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.05■□□□□ 0.96
HOXC4P09017 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.05■□□□□ 0.96
HOXC4P09017 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
HOXC4P09017 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HOXC4P09017 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.05■□□□□ 0.96
HOXC4P09017 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.04■□□□□ 0.96
HOXC4P09017 CDCA4P2-201ENST00000441182 718 ntBASIC21.04■□□□□ 0.96
HOXC4P09017 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.04■□□□□ 0.96
HOXC4P09017 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HOXC4P09017 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.04■□□□□ 0.96
HOXC4P09017 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
HOXC4P09017 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HOXC4P09017 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.03■□□□□ 0.96
HOXC4P09017 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.03■□□□□ 0.96
HOXC4P09017 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.03■□□□□ 0.96
HOXC4P09017 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HOXC4P09017 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.03■□□□□ 0.96
HOXC4P09017 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.03■□□□□ 0.96
HOXC4P09017 AC011767.1-201ENST00000617410 1153 ntBASIC21.03■□□□□ 0.96
HOXC4P09017 AC073111.5-205ENST00000641717 521 ntBASIC21.03■□□□□ 0.96
HOXC4P09017 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HOXC4P09017 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.03■□□□□ 0.96
HOXC4P09017 AC092053.2-201ENST00000640557 1818 ntBASIC21.03■□□□□ 0.96
HOXC4P09017 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.03■□□□□ 0.96
HOXC4P09017 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HOXC4P09017 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.02■□□□□ 0.96
HOXC4P09017 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HOXC4P09017 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms