Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LDLRP01130 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.6■□□□□ 0.89
LDLRP01130 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.6■□□□□ 0.89
LDLRP01130 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.6■□□□□ 0.89
LDLRP01130 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LDLRP01130 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
LDLRP01130 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LDLRP01130 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDLRP01130 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LDLRP01130 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LDLRP01130 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDLRP01130 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LDLRP01130 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LDLRP01130 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.59■□□□□ 0.89
LDLRP01130 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LDLRP01130 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
LDLRP01130 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
LDLRP01130 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
LDLRP01130 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LDLRP01130 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.58■□□□□ 0.89
LDLRP01130 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LDLRP01130 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
LDLRP01130 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.58■□□□□ 0.88
LDLRP01130 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDLRP01130 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDLRP01130 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.57■□□□□ 0.88
LDLRP01130 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDLRP01130 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDLRP01130 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDLRP01130 SERBP1P1-201ENST00000396021 1160 ntBASIC20.57■□□□□ 0.88
LDLRP01130 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LDLRP01130 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.57■□□□□ 0.88
LDLRP01130 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.57■□□□□ 0.88
LDLRP01130 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.57■□□□□ 0.88
LDLRP01130 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.57■□□□□ 0.88
LDLRP01130 IKBKGP1-201ENST00000612193 1073 ntBASIC20.57■□□□□ 0.88
LDLRP01130 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.57■□□□□ 0.88
LDLRP01130 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.57■□□□□ 0.88
LDLRP01130 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
LDLRP01130 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LDLRP01130 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.57■□□□□ 0.88
LDLRP01130 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LDLRP01130 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
LDLRP01130 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.56■□□□□ 0.88
LDLRP01130 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.56■□□□□ 0.88
LDLRP01130 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.56■□□□□ 0.88
LDLRP01130 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.56■□□□□ 0.88
LDLRP01130 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.56■□□□□ 0.88
LDLRP01130 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.56■□□□□ 0.88
LDLRP01130 AC008764.7-201ENST00000593779 1081 ntBASIC20.56■□□□□ 0.88
LDLRP01130 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LDLRP01130 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.56■□□□□ 0.88
LDLRP01130 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LDLRP01130 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LDLRP01130 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 AC005229.4-201ENST00000610085 2198 ntBASIC20.55■□□□□ 0.88
LDLRP01130 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 AC022517.1-201ENST00000592429 346 ntBASIC20.55■□□□□ 0.88
LDLRP01130 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LDLRP01130 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LDLRP01130 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LDLRP01130 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.55■□□□□ 0.88
LDLRP01130 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LDLRP01130 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
LDLRP01130 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.54■□□□□ 0.88
LDLRP01130 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.54■□□□□ 0.88
LDLRP01130 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms