Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.26■□□□□ 0.35
HOXA3O43365 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 AL109923.1-201ENST00000618799 583 ntBASIC17.26■□□□□ 0.35
HOXA3O43365 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HOXA3O43365 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXA3O43365 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.25■□□□□ 0.35
HOXA3O43365 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HOXA3O43365 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 AL355802.2-201ENST00000402069 882 ntBASIC17.25■□□□□ 0.35
HOXA3O43365 MFSD11-216ENST00000590393 1141 ntBASIC17.25■□□□□ 0.35
HOXA3O43365 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 DUSP8P5-201ENST00000422884 1815 ntBASIC17.25■□□□□ 0.35
HOXA3O43365 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXA3O43365 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXA3O43365 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXA3O43365 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXA3O43365 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HOXA3O43365 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HOXA3O43365 AP004607.7-201ENST00000527152 1677 ntBASIC17.24■□□□□ 0.35
HOXA3O43365 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.24■□□□□ 0.35
HOXA3O43365 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.24■□□□□ 0.35
HOXA3O43365 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA3O43365 UBE2DNL-204ENST00000602536 740 ntBASIC17.24■□□□□ 0.35
HOXA3O43365 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.24■□□□□ 0.35
HOXA3O43365 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
HOXA3O43365 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA3O43365 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA3O43365 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA3O43365 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXA3O43365 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA3O43365 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HOXA3O43365 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA3O43365 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA3O43365 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA3O43365 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
HOXA3O43365 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA3O43365 NCF1B-203ENST00000435988 1254 ntBASIC17.23■□□□□ 0.35
HOXA3O43365 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.23■□□□□ 0.35
HOXA3O43365 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXA3O43365 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HOXA3O43365 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.23■□□□□ 0.35
HOXA3O43365 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXA3O43365 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HOXA3O43365 AC133561.1-201ENST00000568600 2415 ntBASIC17.22■□□□□ 0.35
HOXA3O43365 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXA3O43365 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA3O43365 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA3O43365 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXA3O43365 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA3O43365 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXA3O43365 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.22■□□□□ 0.35
HOXA3O43365 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXA3O43365 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.22■□□□□ 0.35
HOXA3O43365 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.22■□□□□ 0.35
HOXA3O43365 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.22■□□□□ 0.35
HOXA3O43365 AP001160.3-201ENST00000601484 763 ntBASIC17.22■□□□□ 0.35
HOXA3O43365 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA3O43365 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.22■□□□□ 0.35
HOXA3O43365 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HOXA3O43365 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA3O43365 OR7E47P-201ENST00000546390 1422 ntBASIC17.21■□□□□ 0.35
HOXA3O43365 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA3O43365 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA3O43365 AC055733.4-201ENST00000638462 1354 ntBASIC17.21■□□□□ 0.35
HOXA3O43365 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA3O43365 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA3O43365 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HOXA3O43365 GPX1P1-201ENST00000388829 606 ntBASIC17.21■□□□□ 0.35
HOXA3O43365 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
HOXA3O43365 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA3O43365 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXA3O43365 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.21■□□□□ 0.35
HOXA3O43365 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.21■□□□□ 0.35
HOXA3O43365 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.21■□□□□ 0.35
HOXA3O43365 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.21■□□□□ 0.35
HOXA3O43365 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HOXA3O43365 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.21■□□□□ 0.35
HOXA3O43365 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.21■□□□□ 0.35
HOXA3O43365 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HOXA3O43365 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HOXA3O43365 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXA3O43365 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXA3O43365 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.2■□□□□ 0.34
HOXA3O43365 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HOXA3O43365 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms