Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC16.96■□□□□ 0.3
COL6A5A8TX70 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.95■□□□□ 0.3
COL6A5A8TX70 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A5A8TX70 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC16.95■□□□□ 0.3
COL6A5A8TX70 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A5A8TX70 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A5A8TX70 AC068587.7-201ENST00000641602 218 ntBASIC16.95■□□□□ 0.3
COL6A5A8TX70 AL049637.2-201ENST00000641778 930 ntBASIC16.95■□□□□ 0.3
COL6A5A8TX70 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A5A8TX70 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A5A8TX70 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A5A8TX70 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A5A8TX70 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC16.95■□□□□ 0.3
COL6A5A8TX70 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.95■□□□□ 0.3
COL6A5A8TX70 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
COL6A5A8TX70 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL6A5A8TX70 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A5A8TX70 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
COL6A5A8TX70 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A5A8TX70 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A5A8TX70 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A5A8TX70 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
COL6A5A8TX70 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A5A8TX70 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A5A8TX70 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A5A8TX70 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.94■□□□□ 0.3
COL6A5A8TX70 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL6A5A8TX70 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A5A8TX70 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A5A8TX70 AC087499.1-201ENST00000418141 1075 ntBASIC16.93■□□□□ 0.3
COL6A5A8TX70 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 AL049597.2-201ENST00000565575 961 ntBASIC16.93■□□□□ 0.3
COL6A5A8TX70 AC233263.1-201ENST00000578059 224 ntBASIC16.93■□□□□ 0.3
COL6A5A8TX70 AC233702.5-201ENST00000584107 538 ntBASIC16.93■□□□□ 0.3
COL6A5A8TX70 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A5A8TX70 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A5A8TX70 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A5A8TX70 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A5A8TX70 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 AL135905.2-201ENST00000584934 1404 ntBASIC16.93■□□□□ 0.3
COL6A5A8TX70 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A5A8TX70 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A5A8TX70 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A5A8TX70 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 AC010980.2-201ENST00000587099 1412 ntBASIC16.92■□□□□ 0.3
COL6A5A8TX70 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A5A8TX70 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A5A8TX70 PRKY-204ENST00000533551 1019 ntBASIC16.92■□□□□ 0.3
COL6A5A8TX70 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A5A8TX70 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A5A8TX70 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 HLA-L-211ENST00000482052 1765 ntBASIC16.92■□□□□ 0.3
COL6A5A8TX70 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 RN7SL471P-201ENST00000580476 299 ntBASIC16.92■□□□□ 0.3
COL6A5A8TX70 AP001412.1-201ENST00000608405 714 ntBASIC16.92■□□□□ 0.3
COL6A5A8TX70 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A5A8TX70 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
COL6A5A8TX70 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL6A5A8TX70 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL6A5A8TX70 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A5A8TX70 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
COL6A5A8TX70 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A5A8TX70 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A5A8TX70 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A5A8TX70 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
COL6A5A8TX70 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A5A8TX70 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A5A8TX70 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC16.89■□□□□ 0.3
COL6A5A8TX70 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A5A8TX70 AC138907.5-202ENST00000569484 235 ntBASIC16.89■□□□□ 0.29
COL6A5A8TX70 MIR4785-201ENST00000585005 73 ntBASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms