Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.73■□□□□ 0.91
VPS4AQ9UN37 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS4AQ9UN37 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS4AQ9UN37 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 AC004687.1-201ENST00000579003 1625 ntBASIC20.71■□□□□ 0.91
VPS4AQ9UN37 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 AC233992.3-201ENST00000607491 485 ntBASIC20.71■□□□□ 0.91
VPS4AQ9UN37 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS4AQ9UN37 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.91
VPS4AQ9UN37 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
VPS4AQ9UN37 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS4AQ9UN37 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 C17orf82-201ENST00000623772 1530 ntBASIC20.69■□□□□ 0.9
VPS4AQ9UN37 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 KRT18P5-201ENST00000436075 1291 ntBASIC20.69■□□□□ 0.9
VPS4AQ9UN37 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 AC136469.2-201ENST00000623944 1028 ntBASIC20.69■□□□□ 0.9
VPS4AQ9UN37 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS4AQ9UN37 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS4AQ9UN37 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS4AQ9UN37 ID1-201ENST00000376105 1233 ntBASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms