Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC007322.4-201ENST00000509611 723 ntBASIC19.1■□□□□ 0.65
COL12A1Q99715 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.1■□□□□ 0.65
COL12A1Q99715 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.09■□□□□ 0.65
COL12A1Q99715 KRT18P35-201ENST00000510488 1269 ntBASIC19.09■□□□□ 0.65
COL12A1Q99715 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.09■□□□□ 0.65
COL12A1Q99715 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL12A1Q99715 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
COL12A1Q99715 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL12A1Q99715 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.09■□□□□ 0.65
COL12A1Q99715 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL12A1Q99715 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL12A1Q99715 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.09■□□□□ 0.65
COL12A1Q99715 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL12A1Q99715 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.09■□□□□ 0.65
COL12A1Q99715 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.09■□□□□ 0.65
COL12A1Q99715 AP003097.1-201ENST00000530657 1135 ntBASIC19.09■□□□□ 0.65
COL12A1Q99715 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.09■□□□□ 0.65
COL12A1Q99715 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.09■□□□□ 0.65
COL12A1Q99715 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL12A1Q99715 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
COL12A1Q99715 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL12A1Q99715 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.08■□□□□ 0.65
COL12A1Q99715 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.08■□□□□ 0.65
COL12A1Q99715 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.08■□□□□ 0.65
COL12A1Q99715 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.08■□□□□ 0.65
COL12A1Q99715 AP001160.3-201ENST00000601484 763 ntBASIC19.08■□□□□ 0.65
COL12A1Q99715 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL12A1Q99715 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL12A1Q99715 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.08■□□□□ 0.64
COL12A1Q99715 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL12A1Q99715 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
COL12A1Q99715 AC093787.1-201ENST00000450396 207 ntBASIC19.08■□□□□ 0.64
COL12A1Q99715 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.08■□□□□ 0.64
COL12A1Q99715 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
COL12A1Q99715 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL12A1Q99715 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL12A1Q99715 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.07■□□□□ 0.64
COL12A1Q99715 AC091874.3-201ENST00000512672 1195 ntBASIC19.07■□□□□ 0.64
COL12A1Q99715 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
COL12A1Q99715 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL12A1Q99715 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL12A1Q99715 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.07■□□□□ 0.64
COL12A1Q99715 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.07■□□□□ 0.64
COL12A1Q99715 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.07■□□□□ 0.64
COL12A1Q99715 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL12A1Q99715 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.06■□□□□ 0.64
COL12A1Q99715 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.06■□□□□ 0.64
COL12A1Q99715 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 AC012306.2-201ENST00000609350 630 ntBASIC19.06■□□□□ 0.64
COL12A1Q99715 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL12A1Q99715 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 AC004687.1-201ENST00000579003 1625 ntBASIC19.06■□□□□ 0.64
COL12A1Q99715 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.06■□□□□ 0.64
COL12A1Q99715 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.06■□□□□ 0.64
COL12A1Q99715 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL12A1Q99715 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL12A1Q99715 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL12A1Q99715 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL12A1Q99715 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL12A1Q99715 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.05■□□□□ 0.64
COL12A1Q99715 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.05■□□□□ 0.64
COL12A1Q99715 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.05■□□□□ 0.64
COL12A1Q99715 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.05■□□□□ 0.64
COL12A1Q99715 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL12A1Q99715 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.05■□□□□ 0.64
COL12A1Q99715 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL12A1Q99715 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.05■□□□□ 0.64
COL12A1Q99715 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL12A1Q99715 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.04■□□□□ 0.64
COL12A1Q99715 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL12A1Q99715 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL12A1Q99715 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.04■□□□□ 0.64
COL12A1Q99715 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.04■□□□□ 0.64
COL12A1Q99715 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL12A1Q99715 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.04■□□□□ 0.64
COL12A1Q99715 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
COL12A1Q99715 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.03■□□□□ 0.64
COL12A1Q99715 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.03■□□□□ 0.64
COL12A1Q99715 AC097658.1-201ENST00000475555 843 ntBASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms