Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LRCH3Q96II8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LRCH3Q96II8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
LRCH3Q96II8 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
LRCH3Q96II8 AL161729.1-201ENST00000604104 1402 ntBASIC23.5■■□□□ 1.35
LRCH3Q96II8 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LRCH3Q96II8 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.49■■□□□ 1.35
LRCH3Q96II8 AC093323.1-202ENST00000635031 2045 ntBASIC23.49■■□□□ 1.35
LRCH3Q96II8 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRCH3Q96II8 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRCH3Q96II8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LRCH3Q96II8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC23.49■■□□□ 1.35
LRCH3Q96II8 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.49■■□□□ 1.35
LRCH3Q96II8 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.49■■□□□ 1.35
LRCH3Q96II8 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRCH3Q96II8 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC23.49■■□□□ 1.35
LRCH3Q96II8 AC010501.1-201ENST00000606270 1962 ntBASIC23.49■■□□□ 1.35
LRCH3Q96II8 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
LRCH3Q96II8 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LRCH3Q96II8 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LRCH3Q96II8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LRCH3Q96II8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LRCH3Q96II8 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
LRCH3Q96II8 Z99916.2-201ENST00000604037 246 ntBASIC23.48■■□□□ 1.35
LRCH3Q96II8 AC016405.3-201ENST00000607710 860 ntBASIC23.48■■□□□ 1.35
LRCH3Q96II8 AC013268.1-206ENST00000638368 961 ntBASIC23.48■■□□□ 1.35
LRCH3Q96II8 AC112229.1-201ENST00000639295 961 ntBASIC23.48■■□□□ 1.35
LRCH3Q96II8 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
LRCH3Q96II8 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
LRCH3Q96II8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.47■■□□□ 1.35
LRCH3Q96II8 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.47■■□□□ 1.35
LRCH3Q96II8 AP003097.1-201ENST00000530657 1135 ntBASIC23.47■■□□□ 1.35
LRCH3Q96II8 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.47■■□□□ 1.35
LRCH3Q96II8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.47■■□□□ 1.35
LRCH3Q96II8 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LRCH3Q96II8 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
LRCH3Q96II8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRCH3Q96II8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LRCH3Q96II8 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LRCH3Q96II8 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LRCH3Q96II8 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRCH3Q96II8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.46■■□□□ 1.35
LRCH3Q96II8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LRCH3Q96II8 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
LRCH3Q96II8 OR10C1-204ENST00000622521 1039 ntBASIC23.46■■□□□ 1.35
LRCH3Q96II8 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
LRCH3Q96II8 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.35
LRCH3Q96II8 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.45■■□□□ 1.35
LRCH3Q96II8 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.35
LRCH3Q96II8 AC005224.4-201ENST00000583262 1652 ntBASIC23.45■■□□□ 1.34
LRCH3Q96II8 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
LRCH3Q96II8 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 AC091874.3-201ENST00000512672 1195 ntBASIC23.45■■□□□ 1.34
LRCH3Q96II8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.45■■□□□ 1.34
LRCH3Q96II8 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.44■■□□□ 1.34
LRCH3Q96II8 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LRCH3Q96II8 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.44■■□□□ 1.34
LRCH3Q96II8 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRCH3Q96II8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRCH3Q96II8 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRCH3Q96II8 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
LRCH3Q96II8 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRCH3Q96II8 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC23.44■■□□□ 1.34
LRCH3Q96II8 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC23.44■■□□□ 1.34
LRCH3Q96II8 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRCH3Q96II8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.44■■□□□ 1.34
LRCH3Q96II8 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRCH3Q96II8 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRCH3Q96II8 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
LRCH3Q96II8 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23.43■■□□□ 1.34
LRCH3Q96II8 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRCH3Q96II8 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC23.43■■□□□ 1.34
LRCH3Q96II8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC23.43■■□□□ 1.34
LRCH3Q96II8 BX088651.1-201ENST00000540551 451 ntBASIC23.43■■□□□ 1.34
LRCH3Q96II8 TK2-213ENST00000563369 882 ntTSL 5 BASIC23.43■■□□□ 1.34
LRCH3Q96II8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC23.43■■□□□ 1.34
LRCH3Q96II8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.43■■□□□ 1.34
LRCH3Q96II8 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRCH3Q96II8 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRCH3Q96II8 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.43■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms