Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 LINC01124-201ENST00000409786 2117 ntBASIC6.59□□□□□ -1.35
SYNE1Q8NF91 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC6.59□□□□□ -1.35
SYNE1Q8NF91 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 AC011767.1-201ENST00000617410 1153 ntBASIC6.59□□□□□ -1.35
SYNE1Q8NF91 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SYNE1Q8NF91 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
SYNE1Q8NF91 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.36
SYNE1Q8NF91 AC006970.2-201ENST00000450065 779 ntBASIC6.59□□□□□ -1.36
SYNE1Q8NF91 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC6.59□□□□□ -1.36
SYNE1Q8NF91 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.36
SYNE1Q8NF91 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.36
SYNE1Q8NF91 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
SYNE1Q8NF91 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
SYNE1Q8NF91 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 MFSD11-216ENST00000590393 1141 ntBASIC6.58□□□□□ -1.36
SYNE1Q8NF91 TFG-210ENST00000620299 1289 ntTSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 STX4-202ENST00000394998 1498 ntTSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 LHPP-203ENST00000392757 840 ntTSL 3 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 AP003733.4-201ENST00000623785 1697 ntBASIC6.58□□□□□ -1.36
SYNE1Q8NF91 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SYNE1Q8NF91 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SYNE1Q8NF91 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
SYNE1Q8NF91 MFF-208ENST00000409616 1247 ntTSL 5 BASIC6.57□□□□□ -1.36
SYNE1Q8NF91 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
SYNE1Q8NF91 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms