Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SLC7A5P2-201ENST00000553010 536 ntBASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 AL138781.1-201ENST00000566567 1274 ntBASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 AC142086.2-201ENST00000569753 217 ntBASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 AC231657.2-201ENST00000624556 255 ntBASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USHBP1Q8N6Y0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 LINC00526-201ENST00000581067 1875 ntBASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC28.6■■■□□ 2.17
USHBP1Q8N6Y0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 CNN2P6-201ENST00000439038 900 ntBASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
USHBP1Q8N6Y0 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
USHBP1Q8N6Y0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
USHBP1Q8N6Y0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
USHBP1Q8N6Y0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC28.58■■■□□ 2.17
USHBP1Q8N6Y0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC28.58■■■□□ 2.17
USHBP1Q8N6Y0 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC28.58■■■□□ 2.17
USHBP1Q8N6Y0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC28.57■■■□□ 2.16
USHBP1Q8N6Y0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC28.57■■■□□ 2.16
USHBP1Q8N6Y0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC28.57■■■□□ 2.16
USHBP1Q8N6Y0 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC28.57■■■□□ 2.16
USHBP1Q8N6Y0 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
USHBP1Q8N6Y0 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
USHBP1Q8N6Y0 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
USHBP1Q8N6Y0 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC28.56■■■□□ 2.16
USHBP1Q8N6Y0 UQCRFS1P1-201ENST00000435169 820 ntBASIC28.56■■■□□ 2.16
USHBP1Q8N6Y0 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 AC010141.2-201ENST00000452426 721 ntBASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 CD99P1-205ENST00000527459 561 ntBASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
USHBP1Q8N6Y0 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 AC098934.4-201ENST00000564127 592 ntBASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 PARP1-210ENST00000629232 477 ntTSL 5 BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
USHBP1Q8N6Y0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 TSPY20P-201ENST00000450910 630 ntBASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 OAS3-207ENST00000551007 998 ntTSL 2 BASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
USHBP1Q8N6Y0 OR7E47P-201ENST00000546390 1422 ntBASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC28.52■■■□□ 2.16
USHBP1Q8N6Y0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC28.52■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms