Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.13■□□□□ 0.49
VPS13CQ709C8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.13■□□□□ 0.49
VPS13CQ709C8 AC133041.1-202ENST00000642053 222 ntBASIC18.13■□□□□ 0.49
VPS13CQ709C8 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 AC005224.4-201ENST00000583262 1652 ntBASIC18.13■□□□□ 0.49
VPS13CQ709C8 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VPS13CQ709C8 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13CQ709C8 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS13CQ709C8 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13CQ709C8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13CQ709C8 AC128676.1-201ENST00000454392 318 ntBASIC18.12■□□□□ 0.49
VPS13CQ709C8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13CQ709C8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 AC009237.3-201ENST00000393279 1427 ntBASIC18.12■□□□□ 0.49
VPS13CQ709C8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13CQ709C8 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13CQ709C8 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13CQ709C8 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS13CQ709C8 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13CQ709C8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS13CQ709C8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 AC211429.1-201ENST00000415277 523 ntBASIC18.1■□□□□ 0.49
VPS13CQ709C8 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13CQ709C8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13CQ709C8 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 AP003733.4-201ENST00000623785 1697 ntBASIC18.1■□□□□ 0.49
VPS13CQ709C8 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13CQ709C8 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS13CQ709C8 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS13CQ709C8 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VPS13CQ709C8 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VPS13CQ709C8 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VPS13CQ709C8 RARRES2P4-201ENST00000514074 484 ntBASIC18.09■□□□□ 0.49
VPS13CQ709C8 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS13CQ709C8 AC068338.2-201ENST00000563278 1430 ntBASIC18.09■□□□□ 0.49
VPS13CQ709C8 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS13CQ709C8 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS13CQ709C8 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13CQ709C8 ECEL1P3-201ENST00000427961 737 ntBASIC18.08■□□□□ 0.48
VPS13CQ709C8 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.08■□□□□ 0.48
VPS13CQ709C8 CYP2T1P-201ENST00000432607 1285 ntBASIC18.08■□□□□ 0.48
VPS13CQ709C8 RNA5SP413-201ENST00000516373 109 ntBASIC18.08■□□□□ 0.48
VPS13CQ709C8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS13CQ709C8 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms