Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC144BQ3MJ40 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 ME3-201ENST00000323418 1068 ntTSL 5 BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC144BQ3MJ40 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC144BQ3MJ40 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.6
CCDC144BQ3MJ40 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 AL024507.2-201ENST00000606070 2574 ntBASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC144BQ3MJ40 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 MYB-221ENST00000527615 2381 ntTSL 5 BASIC25■■□□□ 1.59
CCDC144BQ3MJ40 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 ID1-201ENST00000376105 1233 ntBASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC144BQ3MJ40 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC144BQ3MJ40 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC144BQ3MJ40 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 KRT18P61-201ENST00000585825 1298 ntBASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC144BQ3MJ40 AL137060.1-201ENST00000618151 2648 ntBASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms