Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.47■□□□□ 0.87
LIM2P55344 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.47■□□□□ 0.87
LIM2P55344 OR7E47P-201ENST00000546390 1422 ntBASIC20.47■□□□□ 0.87
LIM2P55344 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.47■□□□□ 0.87
LIM2P55344 MIR572-201ENST00000384983 95 ntBASIC20.47■□□□□ 0.87
LIM2P55344 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.47■□□□□ 0.87
LIM2P55344 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.47■□□□□ 0.87
LIM2P55344 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.47■□□□□ 0.87
LIM2P55344 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LIM2P55344 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.46■□□□□ 0.87
LIM2P55344 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.46■□□□□ 0.87
LIM2P55344 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.46■□□□□ 0.87
LIM2P55344 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIM2P55344 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LIM2P55344 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
LIM2P55344 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
LIM2P55344 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIM2P55344 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LIM2P55344 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LIM2P55344 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.46■□□□□ 0.87
LIM2P55344 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.46■□□□□ 0.87
LIM2P55344 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
LIM2P55344 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.46■□□□□ 0.87
LIM2P55344 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.46■□□□□ 0.87
LIM2P55344 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
LIM2P55344 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.45■□□□□ 0.86
LIM2P55344 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LIM2P55344 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LIM2P55344 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LIM2P55344 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.44■□□□□ 0.86
LIM2P55344 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 SMUG1P1-201ENST00000590640 811 ntBASIC20.44■□□□□ 0.86
LIM2P55344 AC105233.4-201ENST00000642045 216 ntBASIC20.44■□□□□ 0.86
LIM2P55344 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LIM2P55344 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.44■□□□□ 0.86
LIM2P55344 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.44■□□□□ 0.86
LIM2P55344 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.44■□□□□ 0.86
LIM2P55344 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LIM2P55344 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIM2P55344 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIM2P55344 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LIM2P55344 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIM2P55344 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIM2P55344 IRS3P-201ENST00000223076 1006 ntBASIC20.43■□□□□ 0.86
LIM2P55344 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIM2P55344 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.43■□□□□ 0.86
LIM2P55344 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.43■□□□□ 0.86
LIM2P55344 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.43■□□□□ 0.86
LIM2P55344 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIM2P55344 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIM2P55344 AC092053.2-201ENST00000640557 1818 ntBASIC20.43■□□□□ 0.86
LIM2P55344 AC007375.3-201ENST00000600936 2314 ntBASIC20.43■□□□□ 0.86
LIM2P55344 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.42■□□□□ 0.86
LIM2P55344 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.42■□□□□ 0.86
LIM2P55344 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
LIM2P55344 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LIM2P55344 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
LIM2P55344 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.42■□□□□ 0.86
LIM2P55344 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIM2P55344 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIM2P55344 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIM2P55344 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
LIM2P55344 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.41■□□□□ 0.86
LIM2P55344 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIM2P55344 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIM2P55344 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
LIM2P55344 ZNRF2P3-201ENST00000424200 374 ntBASIC20.41■□□□□ 0.86
LIM2P55344 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.41■□□□□ 0.86
LIM2P55344 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.41■□□□□ 0.86
LIM2P55344 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms