Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 EDA-201ENST00000338901 1233 ntBASIC20.86■□□□□ 0.93
HNF4AP41235 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.86■□□□□ 0.93
HNF4AP41235 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.86■□□□□ 0.93
HNF4AP41235 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.86■□□□□ 0.93
HNF4AP41235 AC233992.3-201ENST00000607491 485 ntBASIC20.86■□□□□ 0.93
HNF4AP41235 AL355001.2-201ENST00000620617 1191 ntBASIC20.86■□□□□ 0.93
HNF4AP41235 OXCT2P1-201ENST00000447263 1535 ntBASIC20.86■□□□□ 0.93
HNF4AP41235 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.86■□□□□ 0.93
HNF4AP41235 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.86■□□□□ 0.93
HNF4AP41235 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HNF4AP41235 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
HNF4AP41235 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
HNF4AP41235 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HNF4AP41235 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.85■□□□□ 0.93
HNF4AP41235 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HNF4AP41235 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.85■□□□□ 0.93
HNF4AP41235 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HNF4AP41235 BX842568.3-201ENST00000418104 571 ntBASIC20.85■□□□□ 0.93
HNF4AP41235 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.85■□□□□ 0.93
HNF4AP41235 AF213884.3-201ENST00000563833 479 ntBASIC20.85■□□□□ 0.93
HNF4AP41235 AC126544.1-201ENST00000580842 1059 ntBASIC20.85■□□□□ 0.93
HNF4AP41235 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HNF4AP41235 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HNF4AP41235 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HNF4AP41235 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HNF4AP41235 PKD1P6-201ENST00000343738 4769 ntBASIC20.85■□□□□ 0.93
HNF4AP41235 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HNF4AP41235 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.84■□□□□ 0.93
HNF4AP41235 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
HNF4AP41235 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HNF4AP41235 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HNF4AP41235 AC099791.1-201ENST00000416440 715 ntBASIC20.84■□□□□ 0.93
HNF4AP41235 AP001330.3-201ENST00000520123 633 ntBASIC20.84■□□□□ 0.93
HNF4AP41235 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
HNF4AP41235 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HNF4AP41235 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HNF4AP41235 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
HNF4AP41235 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
HNF4AP41235 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HNF4AP41235 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HNF4AP41235 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.83■□□□□ 0.93
HNF4AP41235 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
HNF4AP41235 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HNF4AP41235 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
HNF4AP41235 AL031432.3-201ENST00000607698 485 ntBASIC20.83■□□□□ 0.93
HNF4AP41235 AC005837.3-201ENST00000612163 286 ntBASIC20.83■□□□□ 0.93
HNF4AP41235 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HNF4AP41235 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
HNF4AP41235 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HNF4AP41235 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.83■□□□□ 0.92
HNF4AP41235 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 MIR638-201ENST00000385237 100 ntBASIC20.82■□□□□ 0.92
HNF4AP41235 AC142381.2-201ENST00000566120 298 ntBASIC20.82■□□□□ 0.92
HNF4AP41235 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.82■□□□□ 0.92
HNF4AP41235 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
HNF4AP41235 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.82■□□□□ 0.92
HNF4AP41235 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HNF4AP41235 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.81■□□□□ 0.92
HNF4AP41235 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.81■□□□□ 0.92
HNF4AP41235 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.81■□□□□ 0.92
HNF4AP41235 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 AC133561.4-201ENST00000566112 224 ntBASIC20.81■□□□□ 0.92
HNF4AP41235 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.81■□□□□ 0.92
HNF4AP41235 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HNF4AP41235 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HNF4AP41235 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms