Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.22■□□□□ 0.51
USF1P22415 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.22■□□□□ 0.51
USF1P22415 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 SMUG1P1-201ENST00000590640 811 ntBASIC18.22■□□□□ 0.51
USF1P22415 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.22■□□□□ 0.51
USF1P22415 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 AC073111.5-205ENST00000641717 521 ntBASIC18.22■□□□□ 0.51
USF1P22415 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
USF1P22415 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.22■□□□□ 0.51
USF1P22415 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USF1P22415 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
USF1P22415 AC079834.2-201ENST00000609776 1949 ntBASIC18.21■□□□□ 0.51
USF1P22415 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.21■□□□□ 0.51
USF1P22415 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USF1P22415 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.21■□□□□ 0.51
USF1P22415 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 CDCA4P2-201ENST00000441182 718 ntBASIC18.21■□□□□ 0.51
USF1P22415 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.21■□□□□ 0.51
USF1P22415 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.21■□□□□ 0.51
USF1P22415 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.21■□□□□ 0.51
USF1P22415 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.21■□□□□ 0.51
USF1P22415 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.21■□□□□ 0.51
USF1P22415 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.21■□□□□ 0.51
USF1P22415 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 AL353803.4-201ENST00000565882 1934 ntBASIC18.21■□□□□ 0.51
USF1P22415 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USF1P22415 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
USF1P22415 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
USF1P22415 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
USF1P22415 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
USF1P22415 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
USF1P22415 AC026185.1-201ENST00000445748 174 ntBASIC18.2■□□□□ 0.5
USF1P22415 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.2■□□□□ 0.5
USF1P22415 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.2■□□□□ 0.5
USF1P22415 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.2■□□□□ 0.5
USF1P22415 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
USF1P22415 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.2■□□□□ 0.5
USF1P22415 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
USF1P22415 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.19■□□□□ 0.5
USF1P22415 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
USF1P22415 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
USF1P22415 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.19■□□□□ 0.5
USF1P22415 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.19■□□□□ 0.5
USF1P22415 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.19■□□□□ 0.5
USF1P22415 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.19■□□□□ 0.5
USF1P22415 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
USF1P22415 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.19■□□□□ 0.5
USF1P22415 OXCT2P1-201ENST00000447263 1535 ntBASIC18.18■□□□□ 0.5
USF1P22415 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.18■□□□□ 0.5
USF1P22415 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
USF1P22415 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
USF1P22415 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.18■□□□□ 0.5
USF1P22415 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
USF1P22415 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
USF1P22415 KRT18P11-201ENST00000435214 1283 ntBASIC18.18■□□□□ 0.5
USF1P22415 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.18■□□□□ 0.5
USF1P22415 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.18■□□□□ 0.5
USF1P22415 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.18■□□□□ 0.5
USF1P22415 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.18■□□□□ 0.5
USF1P22415 RAP2CP1-201ENST00000605103 478 ntBASIC18.18■□□□□ 0.5
USF1P22415 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USF1P22415 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
USF1P22415 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USF1P22415 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.17■□□□□ 0.5
USF1P22415 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.17■□□□□ 0.5
USF1P22415 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
USF1P22415 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
USF1P22415 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
USF1P22415 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.17■□□□□ 0.5
USF1P22415 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.17■□□□□ 0.5
USF1P22415 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.17■□□□□ 0.5
USF1P22415 AC079140.4-201ENST00000507448 529 ntBASIC18.17■□□□□ 0.5
USF1P22415 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.17■□□□□ 0.5
USF1P22415 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.17■□□□□ 0.5
USF1P22415 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.17■□□□□ 0.5
USF1P22415 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
USF1P22415 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms