Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.49■□□□□ 0.71
HOXD4P09016 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXD4P09016 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HOXD4P09016 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXD4P09016 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HOXD4P09016 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HOXD4P09016 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HOXD4P09016 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.48■□□□□ 0.71
HOXD4P09016 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HOXD4P09016 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.48■□□□□ 0.71
HOXD4P09016 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.48■□□□□ 0.71
HOXD4P09016 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.48■□□□□ 0.71
HOXD4P09016 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.48■□□□□ 0.71
HOXD4P09016 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.48■□□□□ 0.71
HOXD4P09016 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXD4P09016 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.47■□□□□ 0.71
HOXD4P09016 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXD4P09016 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXD4P09016 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXD4P09016 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXD4P09016 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HOXD4P09016 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXD4P09016 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXD4P09016 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.47■□□□□ 0.71
HOXD4P09016 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXD4P09016 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
HOXD4P09016 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXD4P09016 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXD4P09016 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HOXD4P09016 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXD4P09016 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXD4P09016 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXD4P09016 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
HOXD4P09016 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
HOXD4P09016 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXD4P09016 EP400NL-214ENST00000641289 2402 ntBASIC19.46■□□□□ 0.71
HOXD4P09016 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HOXD4P09016 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXD4P09016 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXD4P09016 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
HOXD4P09016 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HOXD4P09016 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXD4P09016 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXD4P09016 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HOXD4P09016 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXD4P09016 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.45■□□□□ 0.7
HOXD4P09016 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXD4P09016 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HOXD4P09016 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXD4P09016 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HOXD4P09016 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXD4P09016 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXD4P09016 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD4P09016 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXD4P09016 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD4P09016 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD4P09016 KRT19P1-201ENST00000405746 1186 ntBASIC19.44■□□□□ 0.7
HOXD4P09016 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXD4P09016 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXD4P09016 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HOXD4P09016 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.44■□□□□ 0.7
HOXD4P09016 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXD4P09016 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD4P09016 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXD4P09016 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HOXD4P09016 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXD4P09016 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.43■□□□□ 0.7
HOXD4P09016 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXD4P09016 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.43■□□□□ 0.7
HOXD4P09016 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXD4P09016 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.43■□□□□ 0.7
HOXD4P09016 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXD4P09016 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms