Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.1■□□□□ 0.97
TNFP01375 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFP01375 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFP01375 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFP01375 AC087742.1-201ENST00000575880 1738 ntBASIC21.09■□□□□ 0.97
TNFP01375 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFP01375 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.09■□□□□ 0.97
TNFP01375 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFP01375 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
TNFP01375 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TNFP01375 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.09■□□□□ 0.97
TNFP01375 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.09■□□□□ 0.97
TNFP01375 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TNFP01375 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.09■□□□□ 0.97
TNFP01375 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFP01375 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
TNFP01375 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.09■□□□□ 0.97
TNFP01375 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
TNFP01375 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFP01375 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFP01375 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFP01375 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFP01375 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFP01375 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFP01375 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.08■□□□□ 0.97
TNFP01375 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFP01375 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFP01375 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TNFP01375 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TNFP01375 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TNFP01375 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.07■□□□□ 0.96
TNFP01375 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFP01375 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFP01375 AC137767.1-201ENST00000602918 1920 ntBASIC21.06■□□□□ 0.96
TNFP01375 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
TNFP01375 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
TNFP01375 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFP01375 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.06■□□□□ 0.96
TNFP01375 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFP01375 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFP01375 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFP01375 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFP01375 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFP01375 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFP01375 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFP01375 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFP01375 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFP01375 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.05■□□□□ 0.96
TNFP01375 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFP01375 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFP01375 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFP01375 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFP01375 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TNFP01375 AC011767.1-201ENST00000617410 1153 ntBASIC21.05■□□□□ 0.96
TNFP01375 AC073111.5-205ENST00000641717 521 ntBASIC21.05■□□□□ 0.96
TNFP01375 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TNFP01375 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TNFP01375 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TNFP01375 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TNFP01375 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.04■□□□□ 0.96
TNFP01375 CDCA4P2-201ENST00000441182 718 ntBASIC21.04■□□□□ 0.96
TNFP01375 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.04■□□□□ 0.96
TNFP01375 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.04■□□□□ 0.96
TNFP01375 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.04■□□□□ 0.96
TNFP01375 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.04■□□□□ 0.96
TNFP01375 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
TNFP01375 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.04■□□□□ 0.96
TNFP01375 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFP01375 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFP01375 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFP01375 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFP01375 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFP01375 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
TNFP01375 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
TNFP01375 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
TNFP01375 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.03■□□□□ 0.96
TNFP01375 AP001160.3-201ENST00000601484 763 ntBASIC21.03■□□□□ 0.96
TNFP01375 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFP01375 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms