Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS4BO75351 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS4BO75351 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS4BO75351 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS4BO75351 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS4BO75351 AC087623.3-201ENST00000607047 1098 ntBASIC21.06■□□□□ 0.96
VPS4BO75351 FAM99A-202ENST00000538190 1989 ntBASIC21.06■□□□□ 0.96
VPS4BO75351 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
VPS4BO75351 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS4BO75351 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS4BO75351 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS4BO75351 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 AL137060.1-201ENST00000618151 2648 ntBASIC21.05■□□□□ 0.96
VPS4BO75351 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
VPS4BO75351 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 AC092171.4-201ENST00000609130 632 ntBASIC21.05■□□□□ 0.96
VPS4BO75351 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS4BO75351 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
VPS4BO75351 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS4BO75351 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
VPS4BO75351 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS4BO75351 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VPS4BO75351 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS4BO75351 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS4BO75351 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS4BO75351 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS4BO75351 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS4BO75351 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
VPS4BO75351 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS4BO75351 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
VPS4BO75351 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS4BO75351 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS4BO75351 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS4BO75351 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
VPS4BO75351 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
VPS4BO75351 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS4BO75351 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
VPS4BO75351 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
VPS4BO75351 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS4BO75351 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS4BO75351 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS4BO75351 AC026310.3-201ENST00000625186 2373 ntBASIC21.03■□□□□ 0.96
VPS4BO75351 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS4BO75351 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.03■□□□□ 0.96
VPS4BO75351 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
VPS4BO75351 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS4BO75351 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS4BO75351 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.02■□□□□ 0.96
VPS4BO75351 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS4BO75351 SYT6-210ENST00000641643 1587 ntBASIC21.02■□□□□ 0.96
VPS4BO75351 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS4BO75351 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS4BO75351 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS4BO75351 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS4BO75351 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS4BO75351 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS4BO75351 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.02■□□□□ 0.96
VPS4BO75351 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
VPS4BO75351 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
VPS4BO75351 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
VPS4BO75351 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS4BO75351 AC244015.2-201ENST00000616358 1861 ntBASIC21.01■□□□□ 0.95
VPS4BO75351 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 C17orf82-201ENST00000623772 1530 ntBASIC21.01■□□□□ 0.95
VPS4BO75351 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS4BO75351 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4BO75351 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21■□□□□ 0.95
VPS4BO75351 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
VPS4BO75351 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21■□□□□ 0.95
VPS4BO75351 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21■□□□□ 0.95
VPS4BO75351 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4BO75351 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21■□□□□ 0.95
VPS4BO75351 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21■□□□□ 0.95
VPS4BO75351 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS4BO75351 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4BO75351 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21■□□□□ 0.95
VPS4BO75351 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4BO75351 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4BO75351 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4BO75351 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS4BO75351 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms