Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KRT125P-201ENST00000546827 989 ntBASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 LINC01960-201ENST00000563759 1884 ntBASIC18.48■□□□□ 0.55
CHMP1AQ9HD42 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.47■□□□□ 0.55
CHMP1AQ9HD42 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 MTDHP2-201ENST00000601468 714 ntBASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP1AQ9HD42 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CHMP1AQ9HD42 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 AC026310.3-201ENST00000625186 2373 ntBASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP1AQ9HD42 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 AC073130.3-201ENST00000624389 2278 ntBASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP1AQ9HD42 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 DUX4L4-201ENST00000566884 1269 ntBASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 AC092028.1-203ENST00000608262 953 ntBASIC18.43■□□□□ 0.54
CHMP1AQ9HD42 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms