Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LINC00477Q96M19 FAM99A-202ENST00000538190 1989 ntBASIC16.15■□□□□ 0.18
LINC00477Q96M19 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LINC00477Q96M19 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LINC00477Q96M19 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 pRNA.6-201ENST00000610482 90 ntBASIC16.15■□□□□ 0.18
LINC00477Q96M19 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 pRNA.5-201ENST00000612139 90 ntBASIC16.15■□□□□ 0.18
LINC00477Q96M19 pRNA.11-201ENST00000618423 90 ntBASIC16.15■□□□□ 0.18
LINC00477Q96M19 pRNA.13-201ENST00000619112 90 ntBASIC16.15■□□□□ 0.18
LINC00477Q96M19 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.15■□□□□ 0.18
LINC00477Q96M19 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LINC00477Q96M19 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LINC00477Q96M19 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LINC00477Q96M19 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
LINC00477Q96M19 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LINC00477Q96M19 EFS-203ENST00000429593 2610 ntTSL 2 BASIC16.14■□□□□ 0.17
LINC00477Q96M19 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 AC092171.4-201ENST00000609130 632 ntBASIC16.13■□□□□ 0.17
LINC00477Q96M19 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LINC00477Q96M19 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.13■□□□□ 0.17
LINC00477Q96M19 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 OR2A1-AS1-204ENST00000470435 602 ntBASIC16.12■□□□□ 0.17
LINC00477Q96M19 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LINC00477Q96M19 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC16.12■□□□□ 0.17
LINC00477Q96M19 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LINC00477Q96M19 STX4-202ENST00000394998 1498 ntTSL 2 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 GATM-206ENST00000558336 1522 ntTSL 2 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LINC00477Q96M19 AC087239.1-201ENST00000622671 572 ntBASIC16.11■□□□□ 0.17
LINC00477Q96M19 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LINC00477Q96M19 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LINC00477Q96M19 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LINC00477Q96M19 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LINC00477Q96M19 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.11■□□□□ 0.17
LINC00477Q96M19 OR7E47P-201ENST00000546390 1422 ntBASIC16.11■□□□□ 0.17
LINC00477Q96M19 AC026310.3-201ENST00000625186 2373 ntBASIC16.11■□□□□ 0.17
LINC00477Q96M19 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LINC00477Q96M19 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LINC00477Q96M19 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms