Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.59■□□□□ 0.89
VMP1Q96GC9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VMP1Q96GC9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VMP1Q96GC9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VMP1Q96GC9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VMP1Q96GC9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VMP1Q96GC9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VMP1Q96GC9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VMP1Q96GC9 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.58■□□□□ 0.89
VMP1Q96GC9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VMP1Q96GC9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VMP1Q96GC9 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
VMP1Q96GC9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.58■□□□□ 0.89
VMP1Q96GC9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
VMP1Q96GC9 SLC47A1P1-202ENST00000449666 945 ntBASIC20.58■□□□□ 0.89
VMP1Q96GC9 CA15P2-201ENST00000611168 834 ntBASIC20.58■□□□□ 0.89
VMP1Q96GC9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VMP1Q96GC9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.58■□□□□ 0.89
VMP1Q96GC9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.58■□□□□ 0.89
VMP1Q96GC9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VMP1Q96GC9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.58■□□□□ 0.88
VMP1Q96GC9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VMP1Q96GC9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VMP1Q96GC9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VMP1Q96GC9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VMP1Q96GC9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VMP1Q96GC9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.57■□□□□ 0.88
VMP1Q96GC9 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
VMP1Q96GC9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.57■□□□□ 0.88
VMP1Q96GC9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VMP1Q96GC9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VMP1Q96GC9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.57■□□□□ 0.88
VMP1Q96GC9 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VMP1Q96GC9 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VMP1Q96GC9 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VMP1Q96GC9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VMP1Q96GC9 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VMP1Q96GC9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VMP1Q96GC9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
VMP1Q96GC9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.56■□□□□ 0.88
VMP1Q96GC9 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.56■□□□□ 0.88
VMP1Q96GC9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VMP1Q96GC9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.56■□□□□ 0.88
VMP1Q96GC9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.56■□□□□ 0.88
VMP1Q96GC9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VMP1Q96GC9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VMP1Q96GC9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.55■□□□□ 0.88
VMP1Q96GC9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VMP1Q96GC9 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VMP1Q96GC9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VMP1Q96GC9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
VMP1Q96GC9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VMP1Q96GC9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VMP1Q96GC9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 AC105265.2-201ENST00000467189 838 ntBASIC20.54■□□□□ 0.88
VMP1Q96GC9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 AC126544.1-201ENST00000580842 1059 ntBASIC20.54■□□□□ 0.88
VMP1Q96GC9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VMP1Q96GC9 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VMP1Q96GC9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VMP1Q96GC9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VMP1Q96GC9 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
VMP1Q96GC9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 AC004687.1-201ENST00000579003 1625 ntBASIC20.53■□□□□ 0.88
VMP1Q96GC9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.53■□□□□ 0.88
VMP1Q96GC9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
VMP1Q96GC9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.53■□□□□ 0.88
VMP1Q96GC9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
VMP1Q96GC9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
VMP1Q96GC9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VMP1Q96GC9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.53■□□□□ 0.88
VMP1Q96GC9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VMP1Q96GC9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VMP1Q96GC9 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VMP1Q96GC9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.52■□□□□ 0.88
VMP1Q96GC9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VMP1Q96GC9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
VMP1Q96GC9 AC010525.1-201ENST00000585559 441 ntBASIC20.52■□□□□ 0.88
VMP1Q96GC9 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VMP1Q96GC9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VMP1Q96GC9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.52■□□□□ 0.88
VMP1Q96GC9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.52■□□□□ 0.88
VMP1Q96GC9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VMP1Q96GC9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
VMP1Q96GC9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VMP1Q96GC9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms