Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTF1Q92541 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTF1Q92541 LINC00526-201ENST00000581067 1875 ntBASIC28.27■■■□□ 2.12
RTF1Q92541 COMT-203ENST00000403184 2217 ntTSL 2 BASIC28.27■■■□□ 2.12
RTF1Q92541 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTF1Q92541 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTF1Q92541 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTF1Q92541 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC28.27■■■□□ 2.12
RTF1Q92541 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RTF1Q92541 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC28.27■■■□□ 2.12
RTF1Q92541 AP004607.7-201ENST00000527152 1677 ntBASIC28.26■■■□□ 2.12
RTF1Q92541 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC28.26■■■□□ 2.11
RTF1Q92541 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC28.26■■■□□ 2.11
RTF1Q92541 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RTF1Q92541 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RTF1Q92541 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RTF1Q92541 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
RTF1Q92541 ME3-201ENST00000323418 1068 ntTSL 5 BASIC28.25■■■□□ 2.11
RTF1Q92541 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.25■■■□□ 2.11
RTF1Q92541 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.25■■■□□ 2.11
RTF1Q92541 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RTF1Q92541 PKM-204ENST00000449901 2526 ntTSL 2 BASIC28.25■■■□□ 2.11
RTF1Q92541 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
RTF1Q92541 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RTF1Q92541 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RTF1Q92541 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC28.24■■■□□ 2.11
RTF1Q92541 KRT19P1-201ENST00000405746 1186 ntBASIC28.24■■■□□ 2.11
RTF1Q92541 TESC-206ENST00000541210 936 ntTSL 3 BASIC28.24■■■□□ 2.11
RTF1Q92541 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
RTF1Q92541 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
RTF1Q92541 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
RTF1Q92541 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 AC137761.2-201ENST00000561729 223 ntBASIC28.23■■■□□ 2.11
RTF1Q92541 AC145350.3-201ENST00000569033 163 ntBASIC28.23■■■□□ 2.11
RTF1Q92541 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC28.23■■■□□ 2.11
RTF1Q92541 RARRES2P11-201ENST00000635158 484 ntBASIC28.23■■■□□ 2.11
RTF1Q92541 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 AC137767.1-201ENST00000602918 1920 ntBASIC28.23■■■□□ 2.11
RTF1Q92541 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
RTF1Q92541 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTF1Q92541 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC28.22■■■□□ 2.11
RTF1Q92541 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RTF1Q92541 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RTF1Q92541 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RTF1Q92541 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC28.22■■■□□ 2.11
RTF1Q92541 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RTF1Q92541 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTF1Q92541 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
RTF1Q92541 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
RTF1Q92541 AC016769.1-201ENST00000409132 1010 ntBASIC28.21■■■□□ 2.11
RTF1Q92541 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC28.21■■■□□ 2.11
RTF1Q92541 DBI-210ENST00000542275 757 ntTSL 5 BASIC28.21■■■□□ 2.11
RTF1Q92541 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC28.21■■■□□ 2.11
RTF1Q92541 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC28.21■■■□□ 2.11
RTF1Q92541 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTF1Q92541 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC28.21■■■□□ 2.11
RTF1Q92541 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTF1Q92541 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTF1Q92541 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
RTF1Q92541 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
RTF1Q92541 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC28.2■■■□□ 2.11
RTF1Q92541 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC28.2■■■□□ 2.1
RTF1Q92541 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC28.2■■■□□ 2.1
RTF1Q92541 DLX3-202ENST00000512495 834 ntTSL 2 BASIC28.2■■■□□ 2.1
RTF1Q92541 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RTF1Q92541 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC28.2■■■□□ 2.1
RTF1Q92541 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC28.2■■■□□ 2.1
RTF1Q92541 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC28.2■■■□□ 2.1
RTF1Q92541 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
RTF1Q92541 CASK-201ENST00000378154 2494 ntTSL 5 BASIC28.19■■■□□ 2.1
RTF1Q92541 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
RTF1Q92541 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RTF1Q92541 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RTF1Q92541 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC28.19■■■□□ 2.1
RTF1Q92541 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC28.19■■■□□ 2.1
RTF1Q92541 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RTF1Q92541 STX7-201ENST00000367937 1090 ntTSL 5 BASIC28.19■■■□□ 2.1
RTF1Q92541 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC28.19■■■□□ 2.1
RTF1Q92541 AL034346.1-201ENST00000568244 1277 ntBASIC28.19■■■□□ 2.1
RTF1Q92541 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC28.19■■■□□ 2.1
RTF1Q92541 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RTF1Q92541 AC055733.4-201ENST00000638462 1354 ntBASIC28.19■■■□□ 2.1
RTF1Q92541 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RTF1Q92541 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RTF1Q92541 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC28.18■■■□□ 2.1
RTF1Q92541 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC28.18■■■□□ 2.1
RTF1Q92541 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RTF1Q92541 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RTF1Q92541 AC090192.1-201ENST00000517740 490 ntBASIC28.18■■■□□ 2.1
RTF1Q92541 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC28.18■■■□□ 2.1
RTF1Q92541 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC28.18■■■□□ 2.1
RTF1Q92541 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.18■■■□□ 2.1
RTF1Q92541 KRT87P-202ENST00000534226 1464 ntBASIC28.18■■■□□ 2.1
RTF1Q92541 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
RTF1Q92541 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms