Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 AC055733.4-201ENST00000638462 1354 ntBASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
USHBP1Q8N6Y0 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
USHBP1Q8N6Y0 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC28.72■■■□□ 2.19
USHBP1Q8N6Y0 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC28.72■■■□□ 2.19
USHBP1Q8N6Y0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
USHBP1Q8N6Y0 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.72■■■□□ 2.19
USHBP1Q8N6Y0 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 MDK-213ENST00000617138 635 ntTSL 2 BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
USHBP1Q8N6Y0 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
USHBP1Q8N6Y0 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
USHBP1Q8N6Y0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC28.7■■■□□ 2.18
USHBP1Q8N6Y0 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC28.7■■■□□ 2.18
USHBP1Q8N6Y0 AP001160.3-201ENST00000601484 763 ntBASIC28.7■■■□□ 2.18
USHBP1Q8N6Y0 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
USHBP1Q8N6Y0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
USHBP1Q8N6Y0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 SERP1-208ENST00000491660 830 ntTSL 2 BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC28.69■■■□□ 2.18
USHBP1Q8N6Y0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC28.68■■■□□ 2.18
USHBP1Q8N6Y0 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC28.68■■■□□ 2.18
USHBP1Q8N6Y0 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
USHBP1Q8N6Y0 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC28.68■■■□□ 2.18
USHBP1Q8N6Y0 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 GUSBP6-202ENST00000438529 1198 ntBASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 APTR-205ENST00000447009 902 ntTSL 2 BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 AC079089.2-201ENST00000531211 1277 ntBASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 BRI3-207ENST00000539286 699 ntTSL 2 BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
USHBP1Q8N6Y0 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
USHBP1Q8N6Y0 AC083906.2-201ENST00000511578 360 ntBASIC28.66■■■□□ 2.18
USHBP1Q8N6Y0 MYCNOS-205ENST00000641950 531 ntBASIC28.66■■■□□ 2.18
USHBP1Q8N6Y0 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
USHBP1Q8N6Y0 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
USHBP1Q8N6Y0 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
USHBP1Q8N6Y0 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
USHBP1Q8N6Y0 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
USHBP1Q8N6Y0 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC28.65■■■□□ 2.18
USHBP1Q8N6Y0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC28.65■■■□□ 2.18
USHBP1Q8N6Y0 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC28.65■■■□□ 2.18
USHBP1Q8N6Y0 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 AC005181.1-201ENST00000604782 1256 ntBASIC28.64■■■□□ 2.18
USHBP1Q8N6Y0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
USHBP1Q8N6Y0 AP004607.7-201ENST00000527152 1677 ntBASIC28.64■■■□□ 2.17
USHBP1Q8N6Y0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 AC007322.1-201ENST00000426983 750 ntBASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 AL121832.2-201ENST00000610979 668 ntBASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
USHBP1Q8N6Y0 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 METTL15-202ENST00000403099 795 ntTSL 5 BASIC28.62■■■□□ 2.17
USHBP1Q8N6Y0 TSPY6P-201ENST00000448518 926 ntBASIC28.62■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms