Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.74■■□□□ 1.07
HDDC3Q8N4P3 AC079089.2-201ENST00000531211 1277 ntBASIC21.74■■□□□ 1.07
HDDC3Q8N4P3 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.74■■□□□ 1.07
HDDC3Q8N4P3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.74■■□□□ 1.07
HDDC3Q8N4P3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDDC3Q8N4P3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.74■■□□□ 1.07
HDDC3Q8N4P3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 AC009237.3-201ENST00000393279 1427 ntBASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 AC005224.4-201ENST00000583262 1652 ntBASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 KRT19P1-201ENST00000405746 1186 ntBASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDDC3Q8N4P3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 TMEM191A-211ENST00000637163 1067 ntBASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HDDC3Q8N4P3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDDC3Q8N4P3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HDDC3Q8N4P3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.69■■□□□ 1.06
HDDC3Q8N4P3 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 ESRRAP2-201ENST00000418437 1549 ntBASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.68■■□□□ 1.06
HDDC3Q8N4P3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 KRT18P11-201ENST00000435214 1283 ntBASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 CROCCP5-201ENST00000436658 830 ntBASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.67■■□□□ 1.06
HDDC3Q8N4P3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
HDDC3Q8N4P3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HDDC3Q8N4P3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDDC3Q8N4P3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDDC3Q8N4P3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDDC3Q8N4P3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HDDC3Q8N4P3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HDDC3Q8N4P3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDDC3Q8N4P3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HDDC3Q8N4P3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
HDDC3Q8N4P3 NCF1B-203ENST00000435988 1254 ntBASIC21.65■■□□□ 1.06
HDDC3Q8N4P3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms