Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
VRK3Q8IV63 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.2■□□□□ 0.98
VRK3Q8IV63 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.2■□□□□ 0.98
VRK3Q8IV63 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.2■□□□□ 0.98
VRK3Q8IV63 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VRK3Q8IV63 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.2■□□□□ 0.98
VRK3Q8IV63 OR7E47P-201ENST00000546390 1422 ntBASIC21.2■□□□□ 0.98
VRK3Q8IV63 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VRK3Q8IV63 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VRK3Q8IV63 SMUG1P1-201ENST00000590640 811 ntBASIC21.19■□□□□ 0.98
VRK3Q8IV63 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VRK3Q8IV63 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
VRK3Q8IV63 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.19■□□□□ 0.98
VRK3Q8IV63 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VRK3Q8IV63 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VRK3Q8IV63 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VRK3Q8IV63 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VRK3Q8IV63 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
VRK3Q8IV63 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 MIR572-201ENST00000384983 95 ntBASIC21.17■□□□□ 0.98
VRK3Q8IV63 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK3Q8IV63 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
VRK3Q8IV63 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VRK3Q8IV63 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VRK3Q8IV63 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VRK3Q8IV63 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.16■□□□□ 0.98
VRK3Q8IV63 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.16■□□□□ 0.98
VRK3Q8IV63 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VRK3Q8IV63 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.16■□□□□ 0.98
VRK3Q8IV63 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VRK3Q8IV63 ZNRF2P3-201ENST00000424200 374 ntBASIC21.16■□□□□ 0.98
VRK3Q8IV63 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
VRK3Q8IV63 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VRK3Q8IV63 AC079834.2-201ENST00000609776 1949 ntBASIC21.16■□□□□ 0.98
VRK3Q8IV63 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.15■□□□□ 0.98
VRK3Q8IV63 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.15■□□□□ 0.98
VRK3Q8IV63 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
VRK3Q8IV63 AC105233.4-201ENST00000642045 216 ntBASIC21.15■□□□□ 0.98
VRK3Q8IV63 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.15■□□□□ 0.98
VRK3Q8IV63 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.15■□□□□ 0.98
VRK3Q8IV63 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.15■□□□□ 0.98
VRK3Q8IV63 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK3Q8IV63 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VRK3Q8IV63 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VRK3Q8IV63 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.14■□□□□ 0.98
VRK3Q8IV63 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.14■□□□□ 0.97
VRK3Q8IV63 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VRK3Q8IV63 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VRK3Q8IV63 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
VRK3Q8IV63 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.14■□□□□ 0.97
VRK3Q8IV63 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VRK3Q8IV63 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
VRK3Q8IV63 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VRK3Q8IV63 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
VRK3Q8IV63 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VRK3Q8IV63 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.13■□□□□ 0.97
VRK3Q8IV63 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms